Detail information of Os11g0471200_circ_g.1


General Information
CircRNA Name Os11g0471200_circ_g.1
ID in PlantcircBase osa_circ_009324
Alias Os_ciR7047
Organism Oryza sativa
Position chr11: 16205869-16210522  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os11g0471200
Parent gene annotation Conserved hypothetical protein. (Os11t0471200-01)
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0471300-01:4
Os11t0471200-01:4
Os11t0471300-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACATCCTTAGCTTTTCCACTCGTATCCTCAATGTTGATTTGCCCGACGAGTGCCTTCTCGAAG
AGGGGCTTGTGGTCGCTATCGTCTTCCAATATTGTCctaatctcaatgaagcagtggctgaaga
agcagcagtggctgatcaagaggatgaccagcttggaggtgatctccacggaggtgccatccat
gtgcttcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAATCTCAATGAAGCAGTGGCTGAAGAAGCAGCAGTGGCTGATCAAGAGGATGACCAGCTTGG
AGGTGATCTCCACGGAGGTGCCATCCATGTGCTTCCTTTTGATATCAACTTGTATGCATCTGAC
CATCAAGGAGAAATACATCCAGGTAACCTTGTAAACATGAATAGAAAACAATTGATCTTTGTAG
ATATGGCTTGCATAAATCACTCTAAAATCTTTGCCATTTCTCTGTAAAAATGATCTATAACATG
TGCATTGATGCAATTGCTATCTTCTTGGAACAAAATTGATCTTTCATAAGATTGAGAAAACAAT
TAGGACTTGATTTTTTTTCTTTGATATTTACCAACTCAATTCTGTCTTTGATATTTATACATGT
ATCTACCTACAACTAATCATGATATGCTAGATTCTACATGGATAATTTCCTTTACAGTACTGGT
ATTGAGCTAAATTGTTTGTAGCTCAAGCAACATCATCTTAATATAAAGTAGGAATAAACATGAG
AAATCAGAAAGCAAGACCACTGTTTTCGTCTATTTGTAAAATCATGAACTGGAATAAAAAACAA
ACAACTTTTGTATCTTCCTTTCTAATGTCATAATTTCAGCTAGTACTATAAAAGAAAGTTAGAT
TGTACCTCCAATGTTGTGCGCAAAGAGCTCTGAACTTCAGCACGATATATGGAACCATGGACCA
ATATAGAATAATCTGCATGGAACCATGGATCAATATAGAATAATCTGCATGCAAAAATTATTGT
TTTTGGACATGTGTTAACGGCTGTTAAGTACTGAATTAATGCCGTCAATACTTACATAAGACCA
TAAATATAAAACATCCAATATAGTGGTAGAGTTTATTTCTAACAATTTCCATGAGTGTTGCTGT
ATATTCCTATGCAGGTGACAAACTACCAAAGTTGAGAGGAAATATACATGAAGGTGGAGGAGAA
TCAAACTCGTATCCGAACTTATGGAGTTTTGGACCCAGAAACCCAATTAAACACCTCCAAATGG
ACCAAACATTCATACCAATGGATTTAGGGGCCTAAAATGAGTGTCCAGGCCGAAAACCGAAGCG
AACGGAGCCGTCCCAGGTTCGGCCGAACCCTGAGTACGGATGAACCCTCACGAAGGCCGTTGGC
CCAGGCCAAAGTTGCGTTTGGTAGCAATCCGCTTACCAATGACGGTTATGGCCATTTTCACCGG
TAGAAACCGTCATAACATGGACACTTGACAACACAAGAGAGAAGATGCTCTTTGGATGCTTGGA
GGATCTCCACTCTCTCAAGTCACCTCCACACTATAAATACCCCTCTCCTCCCTCATTCTCACAC
ACACCAAAGCATGAGCTGAATTATAAGAGGCTCTAGTATACTTTATTGTATATTAGATTAGGGA
GAGAGTAAGGTAGAAGAAATCGGAGGAATTACGGAGTTGTCGGTAATCTTCTCTTAATTCTGTA
TCTTGTTAATTACTTTGCTTTAATAGAAATATCATTCTGAGTAATTAAGATTTACTTAGTGAGA
ATTACTTTTTGGTTAGTTCCTAATTAGCGTACAGGATCATTGTTCACTATAGTTTATTAATTTA
TAGTGATTGCTTTAGTGTTTGATCGGCACTAGAGTAGTTATTAATTGCGTAGACGCGGTGTCTA
GGTAATTAATTTCCAGTGGTTGCTGCGTATCCCACAGTACGTTTGAGGTGGGTGTAGAGGTGGT
GACAGCCCTCAAGAGAACTTAAGTCCTCCCTGTCCAGGTACGTAATAGAGCAACATCTGGAAAC
AGCGGGTTGCCAGTGCCTGAAGTATTGCGTTAGGATTAAAATTAAGCTTTCCCTAGACACTGTT
TCTTATTAGGAAATCCTCTATGCCCTCTGCCCACATTAGCTTTGTGTCCTTGGATGAACCTGAC
GATGAGTTGAACTCACACGTTCCCTATGGAAATCGATACTCTGGAATACTCCCAGGTGAAGTGT
TACATCTGTATCTTCTGTGCGCTTGCGGATTCTATCTATAACGTTAAGAAATACCAACAACATG
GTACTCACATGGTATTTGTTATTGTAGACGATGCCGATGCCATGGATCAAGTTCTGCAAGTAAA
TGGAGGTCACAACCATAATGCCTTTCCTTTTGATCTCAACTTTGATGCCGATGAGGAAGACCTA
CAAATGCATCCAGGTAAACCCTTTCATGAATATCAGACTTACAAAAAAAATGATAAAATGTGGT
TTTACCCAAAGGATCATTGAAGAATAATATTATTTATCTAAAACCATGTTTTTAATTAGTAGTA
ATATTATATCATGCCAACTACCTACAATAGTCCAGCCGTGTCATTGGTTGTATTAGTTGCAATA
ACAATTAAGGATTGTAAATTAGACATTTCAGCACATAGTATGTCACACAGAATAATGAGATTGA
CCAATAAATACATTGATATCTTGTATTTACATACAATTGTCATGTCAATTGGTTCACTACCACA
GCAGTCTGAAAGAAAGCACATAAACTAAATTGTGTTAATGTCTCTCTGTCTCACTTAGATCTAA
TATGTATGGTTAAATCATATTACAAATAAAACCACGTGGTGAACCTAAAAAGTTATGCCATAAT
GTTGCAAGCATGTTGATCCATGACAATAAAATATTAAAATTCTGAATTGGTACATATGACTAAC
CGTATAATTGTTGTTGTAGACATGCAAGAGTATGGCGTGTATGCGGGTGATGTGGAAGTTGTTT
TCGAACAAGAGGAGTTGGATGATTCAGATCAGGAAGATGAACAACAAAACAAAAATCTGACCAA
AATACAAAGGCAACAAATATATGCAGCATTGGCTGGAAAAACTAACAATGGAACCCTAAGAAAA
AATGCTACAACTGAAGTTGCAGCAATGTTTAATGTGAAAAGGGCTAGAGTGCAAGCAATTTGGT
GAAGAGTGAAGCAATGTCGTGCCAAGGGAATACCAATCGATGTAAGGTCTAGGAAAAAAAAGAA
TTGTGGTCGCAAAAAGAATGAAATCAACCTGACAGATGTTGCTAATGTTCCCTTGCAACTAAGG
AGCACTTTACGGTCATTTGCATCAGCCTCAGGTATACCAAAGAACACGCTGCACAGGATGTTGA
TAGAAGGGCTGCTAAGACGTCACTCAAACACACTAAAGCCATTGTTGAAGGAAGAGAATAAACA
ATCAAGGCTGCGGTGGTGTCTTTCCATGTTAGATTGGCATACTTTGCCAAATGAACCCAAGTTC
ATTGATATGCGAAACATTGTGGACATAGATGAAAAATGGTTCAATACAACTAAAAGGACAAGAA
CCATTTACATGGTCAATTGGGAGGATGATCCATACAGACCTGTCCAAAACAAAAATTCTATTGA
TAAAGTGATGTTCTCGGCAGCAGTTGCTAGGTCTAGATACAATGAAGAAGGTATCTGCACTTTT
GATGGCAAGATAGGCTTGTGGCCTTTCACCAGAAAGGTACTATAACCTCTTCATATATGCATTT
TTACTTAGTGATTTGATCTGAAAATTAATTATTTGATCTGAAAAGTAATTGTTAATCTAACTTG
ATTATTGTACTACTTAGGAACCAGCTCAAAGGACAAGTCATATTAGATGAAGGGGGACTCTAGT
CACCAAGACAATCAAGGTTGATCAAGATACCGTAAGGTCATTTCTGATTGCTAAAGTCCTACCA
GCTATTATAGCAAGTTGGCCTCGAGAAGAAGCACACAACACTATATGGATTCAGCAGGATAATG
CTCCCTCTCATGTCCCAGTGGATGATACTCAATTTGCCTATGCAGTTTCCCAAACAGGGTTTGA
CATTCAACTCATGCATCAACCTCCTAATTCCCCATATATGAATGCACTAGATCTTGGGTTTTTT
GCGTCTCTACAATCATTAACATATAGAAGGATATCCAGGAATATGGATGACCTAATAGATAATG
TTGAGCAGTAATTTCAGGTCTATGATGACAAGCTAAATAGGGTGTTTCTAACATTGCAGTCTTG
CTTGTTAGAGGTTACGAAAGCTGATGGTGGAAATGGATACAAGATTCCTCATATGGGTAAAGAG
AGGCTAGAGCGTCTAGACATTCTCCCCAATACACTTAGTTGTGGTTTTGAGCTATATGATAAGG
TAAGAACAACATTAGCCAACCAAGTGCAATAAATCATGCAATATGGGAAAGCACTATCATGGTT
TCAGCTTTTGGTTAAATGTCAGGTTGTATATGTGATAAGTTAAGATCAGTGTTACGCAAGTAAT
TTAAGCACTTCAAGATACTATGTTAGGCCATCATTCATAACCACCAAACCAGCACAAAAGCAAC
ACATAATTTTAAGCATTCATCTAAATTTTGTACTCTTAAAACATTCCAGAAAATTCTTTACCGA
TTTTTCCAAGGCATCTTGGTCTTGCATGAGTTCTTCTAGGCCTCTATCATCGTATGGATCTTGC
GCATATCCCCCAATGACCATGCCAACATCATTGTCGCTATCCTTCATCTCCTCGCTGCTCCCCT
CCTCGCTGATCACATCCTTAGCTTTTCCACTCGTATCCTCAATGTTGATTTGCCCGACGAGTGC
CTTCTCGAAGAGGGGCTTGTGGTCGCTATCGTCTTCCAATATTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.090578544
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015