Detail information of AT3G07110_circ_g.2


General Information
CircRNA Name AT3G07110_circ_g.2
ID in PlantcircBase ath_circ_020233
Alias 3:2252625-2252932
Organism Arabidpsis thaliana
Position chr3: 2252625-2252932  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G07110
Parent gene annotation Ribosomal protein L13 family protein
Parent gene strand +
Alternative splicing AT3G07110_circ_g.1
Support reads 2/1/1/2
Tissues seedling;root;flower
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G07110.1:2
AT3G07110.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTTGATCAGGGTCTTGAGGCTGCAGGCTGGACACAAATACTGTCTGTTGGGTCGCCTTTCT
TCTGAAGTCGGGTGGAACCACTACGACACCATCAAGtatgattccacacaagactaagcgtgga
gctaatgcacttgcccgcttgaaggtctttgaaggagttcctactccatatgacaagatcaaga
ggatggtc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 205
Transcript exons: 2252625-2252741,2252845-2252932
TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGA
GTTCCTACTCCATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGGTCTTGAGGC
TGCAGGCTGGACACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTA
CGACACCATCAAG

Genomic sequence TATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGA
GTTCCTACTCCATATGACAAGATCAAGAGGATGGTCGTTCCTGATGCTCTCAAGTTTGTCCTTT
TACCCTTTCATTTTCATTTTTTTTCAGTTTCCTTCATTTATACTTACAAGTAGCTACAGTCTCT
GAAACTTTGATTCTTCCTTCTTGATCAGGGTCTTGAGGCTGCAGGCTGGACACAAATACTGTCT
GTTGGGTCGCCTTTCTTCTGAAGTCGGGTGGAACCACTACGACACCATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.396284417
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020