Detail information of 1_circ_igg.4


General Information
CircRNA Name 1_circ_igg.4
ID in PlantcircBase ath_circ_004081
Alias NA
Organism Arabidpsis thaliana
Position chr1: 8365170-8369422  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.2 1_circ_igg.3 1_circ_ag.4 AT1G23580_circ_g.1 1_circ_ag.2 1_circ_ag.3
Support reads 3
Tissues inflorescences
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGCTTGCACAAACGTACTGAATCTACATATAGTGGCTCTATCTTCCAGTTACCTTCGAAAAC
TTTCATGAACATCATTTTCTCTTTTTTATATTTTGCtgtaaattctttttggttttcatccaca
attagttctatcgggatagctccagaccaccaaaggaagtcccatgccaaagcttgctccacct
tcacgatc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 239
Transcript exons: 8365170-8365388,8367927-8367946
TGTAAATTCTTTTTGGTTTTCATCCACAATTAGTTCTATCGGGATAGCTCCAGACCACCAAAGG
AAGTCCCATGCCAAAGCTTGCTCCACCTTCACGATCTGCCTCCGTCCATCTTTCTTTAAAACCT
TTCTTGATTTGTATTCCTTCATCAGAAAAATATCACACTCTCAAGGACTACTATCAATAATACC
ACATTCGAAACATACAATGATAGGGAACTTTTTTGTTGTCACCTTAA

Transcript length: 406
Transcript exons: 8365170-8365368,8367927-8367946,8369236-8369422
TGTAAATTCTTTTTGGTTTTCATCCACAATTAGTTCTATCGGGATAGCTCCAGACCACCAAAGG
AAGTCCCATGCCAAAGCTTGCTCCACCTTCACGATCTGCCTCCGTCCATCTTTCTTTAAAACCT
TTCTTGATTTGTATTCCTTCATCAGAAAAATATCACACTCTCAAGGACTACTATCAATAATACC
ACATTCGCTTTTTTGTTGTCACCTTAAGAAAATATTGGTCCATTGTTACTTTCGATCCAACCCT
TCCTTGTCCGCCACTACATTTTTTGTATTCTTGTAGACTCTTCGGCTCCCTTTGCTTGCACAAA
CGTACTGAATCTACATATAGTGGCTCTATCTTCCAGTTACCTTCGAAAACTTTCATGAACATCA
TTTTCTCTTTTTTATATTTTGC

Genomic sequence TGTAAATTCTTTTTGGTTTTCATCCACAATTAGTTCTATCGGGATAGCTCCAGACCACCAAAGG
AAGTCCCATGCCAAAGCTTGCTCCACCTTCACGATCTGCCTCCGTCCATCTTTCTTTAAAACCT
TTCTTGATTTGTATTCCTTCATCAGAAAAATATCACACTCTCAAGGACTACTATCAATAATACC
ACATTCGAAACATACAATGATAGGGAACAAAATCCAGAAGTTGACGCCCATGCTTGTTCATATC
GAAGAAGAGTGGGCCATCATTTGGATTAGTGAAAAGTTCGAAGACTCCATTAGGATTCCAGCCT
AATGTCAGTTCTATGTTCATATGGCATAGTCCCTTTTTTGTTGTCACCTTCAAAATAAACAAAA
CAAATTAAGATTGTTGTTCTTTAGAAAAGAGCTTTCGTCAAGCCTAGGTAGTTTCCTTGCCAAT
TTCTTTTTTTTTTTCAAAAACAAGGCCATCTAAAGTGCAGTTGATTTCTCAGACCCTTTCAAGC
CAAATATACATAAAATCCGAGAATCCTTTCCTCCGTTTTTTTTTTTTTGCGAGAATTGTTTCTC
GGATGTTGAATCTACCAATTCGTTTTAGGAATCCTAGCTAGTAAAAAAAAGAAAAGAAATTGAA
CTCATTTTCTTAGGGAAGTTAACATATTTTCGAGGTCACTCCTAGTATTATCTCTTGTGTTAAT
ACTATTAACATACATCAATAAACTCAATACTTTCAAGTTCACAATATTGGCATGGTTTTAGAGC
CAAGTTTAACCCTAGAGAATATGCTAACTTCCGTAATAAGATAAGTAAATTTTCTTTTCTTTTT
TTTTACTAGGATTCTCCTAGTAATTCTTTCTAAAATAAGTATTGAGATGTTGTTAGGCTATTTG
CTTTTGTTACCTTGACCTTCGGAGGGGCATCATACCATGGATGCTTCTTCTCTGAAGCACTCCA
AAGTTCATATTGCTTCTTCATTTCCTCTTTGTCATAGACTAGTTCTTGATTATTACTATCTTTC
TCTGACTCTGAATTAGTATTAACATCCACAAATCTTTTGGACTCACCCTACAATAACGAACATA
ATTTATAATAGTTTATACTAATTTGACTTGTCGAGTTCTAAGAATGATGGAAATGAAACTGACC
TTAGGAGGTTCTTGAATGTTCTGATTTATCCAGCCATCAAATCCAGAAAATACCCTCATTTTGC
TCTGAAGTTTTGGTCCACAAACGATGTTTACCTAATCAGACAGAACAAGAGCATAAAATAGTAC
GTTTGTATATATTGTGGATTGAGTAATAAAAGTTTGGTTCAAATTTAGAAAATTTCAATATAAA
ACTGAAATAATGGTGTACGTTAGGTTTTACGTGTGGAGAAACAAAGTAGTAGGCAGCTTCATTC
TCGTGAGTTTTACGTATTGAATAAACAAAGAAGTTATTTCCCTTATTTTGTATGTATTTAGTAG
TCGAGAGGTCGATAAATTGAAGACTGATGCGTGCCCTCGCGGAATCAGGATTAGTCAACTTGAC
TTACTAGTCGGATTGCTTTGATCGGAATTTCTTTTTCTAAAGATGATCCGTCGGGATCAAATAT
GGACCGCTCCACTCTGCTTAATATTCCGGTTAATTTAGGTATTGACTGCTTTAAATTTAATTAC
CTGGCGGTGGGTACTAGTTTGTGTTGTATTTGCCATGTTAGCTGCTTGAGATCTTTATGATATT
GTTTGAGTATATTGAATGACGAGTGTCAAGTATCCACATTAGCTGTCCCAAAGGCTTGTTCAGT
TTATTTTATTAGTTTAATGGTAACCTTTTTACCAAAAAAACAACAAAAATATTCACATAAACAA
GATACCTAAAAATATACTTGATATGGTTTTGTAGTACTAAAAAATTATGAATTTTATATTTTCC
CCTATTAGAATTCCCTTTTGAATAAACTGTTTACCGAGATAAGTTTTATATTGTTTTGTTTATT
TCGATTTTGGGGCTTTTCAAACTTCTCGTAAAGTGGTACCCGCTTTTCTAAGATCTTCGAGCAG
AATCTTGGTGGTTCTGATGGTGATCCCACGAATGATCCAAGAAACCGGTGGTCGATTAAGAAGA
GAAGAAGGCTCAAAAATCTGCTCCATTGTAACTTTTGACCCAACTTTTCCTTGTCCACCGCTAC
ATATTTTGTATTCTTCTCGACTTTTTGGCGACCTTGACTTGCACAAGCGTTCCTGATCTACGTA
ATCTGGCTCAACTTTCCAGCTACCCTTGAACACTTTCATTAACATCATTTTCTTTGTCGTATAT
TTTGCCTATATGCAAGATTTATTGATCAAACACTAGTTAATACATCCAAAACTGAACAAATTAA
ACAACTGATTTTCTTAGAGGATATCTGTAAGCTTTCTTACTGTTAGATTCTTATGGTTTTCGTG
AATTATAAGATGTATTGGGATATCTACTGAACACCCAAGAAAGTTCCAGGACAAAGCTTTTTCC
ACCTCCGTGGTCTGCCTTGGTCCATCCTTCTTCAAAACCTTTGTTGATTTGTTTTCCTTCATTA
GAAAAAAGACCACACTCTCAATTCTTGCTTCAATTAACTAATACTCAGTTTACAACTATATTAA
AATGACATACCAAACGTTGGCGCCCGGCCTTATCCTCTTTGAAGAAAGGAAAGTTGTTTGGATT
AGTGAACATCTCATAGACTGCTTCAGGAGGCAATCCCAATTTGAATTCTATGTTCAAATGGCAA
AGACACTTTTTTGTTGTCACCTTAAAACATCCAAAAATGTAACAAACTTTTTAGATATTTTCTC
TTAATGTTAGTAACTCCTCTTAAAGGCAATAAAAAACTAAAAGGTATTGAGATTTTGTTTGCAA
ATTTGGTCTTTACCTTCACCTTAGCTGGAGCATCATACCATGGATGTTTTTTCTCAGCAGCTCT
CCAAAGTCTTGATTCCTTCTTTACCTCAGCTAAGTCATAATATTTAGGATCTACCGCCCACACA
GAATTAGATGCAGGGCTCTTGGACTCGACCTACAACAACAAACACTATTCTACATTTGATTTGA
CTTCCTTGAGTTCTGTGATTATAGAAATGAAACTGACCTCATGAGGCTCTTCAACATGAGGATT
GATCGACCCACTAAATCTAGGAGTTACACTCATTTTGTTTCTCAAAGTTTAGTCCAAAACTATA
TTATCCTAATCAGAGTAATAGAAAATGAAAGAGAACTCGAAAGAAACGTATAAGAAGGCACAAG
GGAAAACTAAAACGTGCAGCTCAAATTTTATGAGTTTCTGACGTACAGGGCTCCTACATGAATC
CTAAATTCTAAATTTTCCTCTTGTCCCTTCAAGTCAAATTATTTCACAATTTAGAAAAATTAAA
TGGAATCATTTATTTTCAATATTCAGAAGATTTAAAAACTTATTTCCGTCTACTCACAAAAGAA
GCTATCATCCCATGATTGAAGTTACCTTTAAAAAATTTTGACTTTTTTTTTTTTTTGGACATCA
CTACAATTGGTTTATAGGTTATAGGTTTTTGGGTTATTTAGAATTCTTCGTTGTTTTTGAACTC
TATTTATTTTTATTTATTTGGGAATTAAGAGTTTTGTCCTTAATTTCAGTTGGTTTTATTTGAG
TATATAGAGATCAAAGGGTGTTGAGATGAAACATTTTTGTGATCATTAAAAACATGCTTTTGAC
AAGAAGCAGTTTCCGTACCATTCACGTCGTGACTCATTCACGTCGTGACTCATTCACGTCGTGA
CTCATTCACGTCGCGACTCATCCGGTTGAACCGTTTACATGCTTTGACGTTGTATAAGATATAT
TGGTAAAGAGCTTTGTTAGAACTTACAACATACTTATGTGTGACCATTTAGGTTAGCGTTTTTC
ATCTTTGTTGCTTGATGTCTTTATAACATCGTTATCTAGAGACTCACTCTCGTAGTACAACACT
CGCATGTTGAAGCATTTTGAGCAGGGTTTTTGTGGTCCTGATGGTGATATCACGAATGAACCAA
GAAATTGGTGGCAGATTAAAAGGAGGATATGGCTGAAAATATTGGTCCATTGTTACTTTCGATC
CAACCCTTCCTTGTCCGCCACTACATTTTTTGTATTCTTGTAGACTCTTCGGCTCCCTTTGCTT
GCACAAACGTACTGAATCTACATATAGTGGCTCTATCTTCCAGTTACCTTCGAAAACTTTCATG
AACATCATTTTCTCTTTTTTATATTTTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.270967221
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017