Detail information of AT1G16610_circ_g.5


General Information
CircRNA Name AT1G16610_circ_g.5
ID in PlantcircBase ath_circ_002930
Alias NA
Organism Arabidpsis thaliana
Position chr1: 5677466-5678209  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT1G16610
Parent gene annotation arginine/serine-rich 45
Parent gene strand -
Alternative splicing AT1G16610_circ_g.2 AT1G16610_circ_g.3 AT1G16610_circ_g.4
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G16610.1:4
AT1G16610.6:4
AT1G16610.5:4
AT1G16610.2:4
AT1G16610.3:4
AT1G16610.7:4
AT1G16610.4:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAGAAATCAACATACCAAAGATTTCTTTGAGATGGGCTTCATTCACATTCCTGCTAAGAGAA
TCAACATGGAGAACAAGAGATTCTTGAACAGCTTTCtctctcttgggcgcctgggaccaccatc
tttctcagcgtcagcagcagcattatcagattttggagcatctctttttggtgcagctgagaca
ggtttagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTCTCTTGGGCGCCTGGGACCACCATCTTTCTCAGCGTCAGCAGCAGCATTATCAGATTTTGG
AGCATCTCTTTTTGGTGCAGCTGAGACAGGTTTAGGGGGTGAAGATACTTTCTGACGAGGTGGT
AGTGTGAACGTTGCTTTAACAACCTTTCCATCAATTTGGGCCTGTGTTCAGTGAACAAAAAAAA
AACATGCATAAATCTTCTCTGTCAATATGTCAAGTACAGTGCATTTCATAATTGGAAAGAGACA
TACACCATCCATGTAGAGCTGAGCTTTCTCAGCATCAGCTCTTGCCTTGAACTCAACATAACCA
TGTCCTCTTGGAAGATTAACCTGTTAATAATATTCAAAGGAATTATGAGCAGATTTCAACAAGT
GATGCAAGTAAACAACAGAGAGTAAAGAGAATAGCAACTTACAGCTCGATCCATCGCAATTTCG
ACATGTATAACTTCACCAAAGTTGCCTAATAATAACATGAAACCAAGCCATGTTATAAGACTTA
ACATTTAGCCAACACAAGGAAAACAAAAGACCAGTGATGATCGTAATGCCGTATACACTACTGA
TGACATTAGCGGACATGTGTAGACAGTTATCATGTAGTAAGATTAGAAGAAGCAGAAGAAACAG
AGAAAAGAGAAATCAACATACCAAAGATTTCTTTGAGATGGGCTTCATTCACATTCCTGCTAAG
AGAATCAACATGGAGAACAAGAGATTCTTGAACAGCTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.157043293
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017