Detail information of AT2G35060_circ_g.2


General Information
CircRNA Name AT2G35060_circ_g.2
ID in PlantcircBase ath_circ_016538
Alias 2:14777394-14777639
Organism Arabidpsis thaliana
Position chr2: 14777394-14777639  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G35060
Parent gene annotation Potassium transporter
Parent gene strand -
Alternative splicing NA
Support reads 1/1
Tissues root;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G35060.4:1
AT2G35060.1:1
AT2G35060.3:1
AT2G35060.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGGCTGTAAGTAGTAAGCTCTTCATCAGTACGGTGTTGGTTCTGAATTGTTTTGACTTTGGCAT
GTCTACAGAGTAATGAATACAAAGCAAACGTCCCACcagaaatagcgggagtaaggataccatc
gccgatgaccatacacgtaccaacaagaactaaaataagaagcgccgtttttctagatgtccgc
ttttctaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 246
Transcript exons: 14777394-14777639
CAGAAATAGCGGGAGTAAGGATACCATCGCCGATGACCATACACGTACCAACAAGAACTAAAAT
AAGAAGCGCCGTTTTTCTAGATGTCCGCTTTTCTAACCATCTTTTAGTCTTAGCAGCAAAGGAA
TGCTCATGGAACGTAGTGCGGCTGTAAGTAGTAAGCTCTTCATCAGTACGGTGTTGGTTCTGAA
TTGTTTTGACTTTGGCATGTCTACAGAGTAATGAATACAAAGCAAACGTCCCAC

Genomic sequence CAGAAATAGCGGGAGTAAGGATACCATCGCCGATGACCATACACGTACCAACAAGAACTAAAAT
AAGAAGCGCCGTTTTTCTAGATGTCCGCTTTTCTAACCATCTTTTAGTCTTAGCAGCAAAGGAA
TGCTCATGGAACGTAGTGCGGCTGTAAGTAGTAAGCTCTTCATCAGTACGGTGTTGGTTCTGAA
TTGTTTTGACTTTGGCATGTCTACAGAGTAATGAATACAAAGCAAACGTCCCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.380072087
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020