Detail information of AT2G10940_circ_g.10


General Information
CircRNA Name AT2G10940_circ_g.10
ID in PlantcircBase ath_circ_013146
Alias NA
Organism Arabidpsis thaliana
Position chr2: 4311606-4311755  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, circseq_cup, find_circ
Parent gene AT2G10940
Parent gene annotation At2g10940/F15K19.1
Parent gene strand -
Alternative splicing AT2G10940_circ_g.1 AT2G10940_circ_g.2 AT2G10940_circ_g.3 AT2G10940_circ_g.4 AT2G10940_circ_g.5 AT2G10940_circ_g.6 AT2G10940_circ_g.7 AT2G10940_circ_g.8 AT2G10940_circ_g.9 AT2G10940_circ_g.11 AT2G10940_circ_g.12 AT2G10940_circ_g.13
Support reads 42
Tissues leaf, aerial, inflorescences, whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G10940.1:1
AT2G10940.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACGGGTAGCTTGGGGACGGTCACTGGAGGAACGGGTAGCTTGGGGACGGTCACAGGAGGAAC
GGGTAGCTTAGggacggtcactggaggaacgggtagcttaggtacagttaccgggggaacgggt
agcttagggactgtcactggag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 150
Transcript exons: 4311606-4311755
GGACGGTCACAGGAGGAACGGGTAGCTTAGGTACAGTTACCGGGGGAACGGGTAGCTTAGGGAC
TGTCACTGGAGGAACGGGTAGCTTGGGGACGGTCACTGGAGGAACGGGTAGCTTGG

Transcript length: 150
Transcript exons: 4311606-4311755
GGACGGTCACTGGAGGAACGGGTAGCTTAGGTACAGTTACCGGGGGAACGGGTAGCTTAGGGAC
TGTCACTGGAGGAACGGGTAGCTTGGGGACGGTCACTGGAGGAACGGGTAGCTTAG

Transcript length: 150
Transcript exons: 4311606-4311755
GGACGGTCACTGGAGGAACGGGTAGCTTAGGTACAGTTACCGGGGGAACGGGTAGCTTAGGGAC
TGTCACTGGAGGAACGGGTAGCTTGGGGACGGTCACTGGAGGAACGGGTAGCTTGGGGACGGTC
ACAGGAGGAACGGGTAGCTTAG

Transcript length: 150
Transcript exons: 4311606-4311755
GGACGGTCACTGGAGGAACGGGTAGCTTAGGTACAGTTACCGGGGGAACGGGTAGCTTAGGGAC
TGTCACAGGAGGAACGGGTAGCTTAGGGACGGTCACTGGAGGAACGGGTAGCTTGGGGACGGTC
ACAGGAGGAACGGGTAGCTTAG

Genomic sequence GGACGGTCACTGGAGGAACGGGTAGCTTAGGTACAGTTACCGGGGGAACGGGTAGCTTAGGGAC
TGTCACTGGAGGAACGGGTAGCTTGGGGACGGTCACTGGAGGAACGGGTAGCTTGGGGACGGTC
ACAGGAGGAACGGGTAGCTTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.583916294
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017