Detail information of AT2G31440_circ_g.1


General Information
CircRNA Name AT2G31440_circ_g.1
ID in PlantcircBase ath_circ_015890
Alias NA
Organism Arabidpsis thaliana
Position chr2: 13399819-13399944  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT2G31440
Parent gene annotation Gamma-secretase subunit APH1-like
Parent gene strand -
Alternative splicing NA
Support reads 5
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G31440.1:1
AT2G31440.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAGTTAAGAGGCTCAAACAAAAGAATACAGCATGCGCCACACCATGACCTAAACCACCAGc
agagatgagaaaaaatggcaccttcgaacatctttcgacatagaatgtggctggaccaaacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAGATGAGAAAAAATGGCACCTTCGAACATCTTTCGACATAGAATGTGGCTGGACCAAACGC
TGGAGTTAAGAGGCTCAAACAAAAGAATACAGCATGCGCCACACCATGACCTAAACCACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.236887037
Functional Information
Coding potential Y
Potential coding position 13399851-13399821(-)
Potential amino acid sequence MFEGAIFSHLCWWFRSWCGACCILLFEPLNSSVWSSHILCRKMFEGAIFSHLCWWFRSWCGACC
ILLFEPLNSSVWSSHILCRKMFEGAIFSHLCWWFRSWCGACCILLFEPLNSSVWSSHILCRKMF
EGAIFSHL(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017