Detail information of AT2G04550_circ_g.1


General Information
CircRNA Name AT2G04550_circ_g.1
ID in PlantcircBase ath_circ_012796
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1588360-1589497  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene AT2G04550
Parent gene annotation Protein-tyrosine-phosphatase IBR5
Parent gene strand +
Alternative splicing NA
Support reads 4
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GC-TC
Number of exons covered AT2G04550.1:4
AT2G04550.3:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGTTGTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGAGAGTCATCAGTGGG
TTAAACAACGGAGACCAAGCACTGACATAAGTCCAGatacaaaaaaaactctcttctcaagtct
ctccttcttctccgtccttcccaattcttccgttcaaacaaatttctccaaacccaaaccctaa
tttcctcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATACAAAAAAAACTCTCTTCTCAAGTCTCTCCTTCTTCTCCGTCCTTCCCAATTCTTCCGTTCA
AACAAATTTCTCCAAACCCAAACCCTAATTTCCTCCGTCTGTGAAATCAAGGGTTTTCTCTGAT
CTGGGTTTTGATCAGAAATCAGATCTAGGTTTAATTTTCGAAATCAAATTATGAGGAAGAGAGA
AAGAGAGAACCCTTGTTCGATTTGTGGGCATTACCATAAGTACGAGGAAGGAGAAGTATGTGGA
GTCTGTGGTCACTGTATGCCTGTTTCTTCCGATACGGTGGCGCCGCAACAAGTCCACGTCAGTG
CTTTTCCGTCGGAGATTCTCCCTGAGTTTCTTTACCTCGGTAGTTACGACAACGCTTCTCGCTC
TGAGCTTCTTAAGACTCAAGGAATCTCTCGTGTTCTTAATGTGAGTTTCTTTGCTTTGATTTTG
AATTCATGAATTGCTTTTGTTTTAAACATTGATGATGACCCTTAAGAAAAAGATAAGATCTTTG
AATCTTTGAATCGGTTTGTTTAGTTAGGGTTTTGCCTTGTAGATGAATCTTTCTTATACTTATA
CGTTTTGTTGACTTATGGTTTCTGTTAAAGTTCCTGTTATGGTAATAGAGAGGAATGTGTTGTT
TACTATTTGTTGGTATTGACTCTGTTTTTGTTACTCTGTTTCAGACGGTTCCTATGTGCCAGAA
TCTCTACAGGAATTCATTCACTTATCATGGTCTTGATAATGAAAAAGTTTTACAGTTTGATGAT
GCTATTAAGTTCTTAGGTATGTTGATTCTATCTCAAGTTTCTAGATTTCATCTTTATGATTTTT
TCTTGACGGTCTTGCTTTGTGTAGACCAATGTGAGAAGGACAAGGCACGTGTTCTTGTGCATTG
CATGTCTGGGAAAAGTAGGTGAGTACATTTATCATTCTCTTACTCTCATCCTAAACTTGCGGCT
GCTTTCTTATGATTACCATTAATTATTTAGACTAATAGAGTGATATGTTTTGTGTTTCGATTAC
ATGACAGATCACCAGCGGTTGTTGTAGCGTACTTGATGAAACGAAAAGGGTGGAGACTCGCTGA
GAGTCATCAGTGGGTTAAACAACGGAGACCAAGCACTGACATAAGTCCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.13732079
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017