Detail information of AT5G08470_circ_g.4


General Information
CircRNA Name AT5G08470_circ_g.4
ID in PlantcircBase ath_circ_037057
Alias At_ciR4580
Organism Arabidpsis thaliana
Position chr5: 2736822-2738746  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT5G08470
Parent gene annotation Peroxisome biogenesis protein 1
Parent gene strand +
Alternative splicing AT5G08300_circ_g.1 AT5G08300_circ_g.2 AT5G08300_circ_g.3 5_circ_ag.4 AT5G08370_circ_g.1 AT5G08370_circ_g.2 AT5G08370_circ_g.3 AT5G08370_circ_g.4 AT5G08370_circ_g.5 AT5G08380_circ_g.1 AT5G08380_circ_g.2 AT5G08380_circ_g.3 AT5G08380_circ_g.4 AT5G08390_circ_g.1 AT5G08390_circ_g.2 AT5G08390_circ_g.3 AT5G08390_circ_g.4 AT5G08390_circ_g.5 AT5G08390_circ_g.6 AT5G08390_circ_g.7 AT5G08390_circ_g.8 AT5G08390_circ_g.9 5_circ_ag.10 AT5G08410_circ_g.1 AT5G08410_circ_g.2 AT5G08410_circ_g.3 AT5G08415_circ_g.1 AT5G08415_circ_g.2 AT5G08415_circ_g.3 AT5G08415_circ_g.4 AT5G08415_circ_g.5 AT5G08420_circ_g.1 AT5G08420_circ_g.2 AT5G08420_circ_g.3 AT5G08420_circ_g.4 AT5G08420_circ_g.5 AT5G08420_circ_g.6 AT5G08420_circ_g.7 AT5G08430_circ_g.1 AT5G08430_circ_g.2 AT5G08430_circ_g.3 AT5G08440_circ_g.1 AT5G08440_circ_g.2 AT5G08440_circ_g.3 AT5G08440_circ_g.4 AT5G08440_circ_g.5 AT5G08440_circ_g.6 AT5G08440_circ_g.7 AT5G08450_circ_g.1 AT5G08450_circ_g.2 AT5G08450_circ_g.3 AT5G08450_circ_g.4 AT5G08450_circ_g.5 AT5G08450_circ_g.6 AT5G08450_circ_g.7 AT5G08450_circ_g.8 AT5G08470_circ_g.1 AT5G08470_circ_g.2 AT5G08470_circ_g.3 AT5G08470_circ_g.5 AT5G08470_circ_g.6 AT5G08470_circ_g.7 AT5G08470_circ_g.8 AT5G08470_circ_g.9 AT5G08470_circ_g.10 AT5G08470_circ_g.11 AT5G08470_circ_g.12 AT5G08470_circ_g.13 AT5G08470_circ_g.14 AT5G08500_circ_g.1 AT5G08500_circ_g.2 AT5G08500_circ_g.3 AT5G08500_circ_g.4 AT5G08500_circ_g.5 AT5G08530_circ_g.1 AT5G08530_circ_g.2 AT5G08530_circ_g.3 AT5G08530_circ_g.4 AT5G08530_circ_g.5 AT5G08530_circ_g.6 AT5G08535_circ_g.1 AT5G08535_circ_g.2
Support reads 3
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT5G08470.2:3
AT5G08470.4:3
AT5G08470.1:3
AT5G08470.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGCAGGAATGACCGTGTTGTTGTCTCCTGCAGCTGGAATGTGGTTTAGCAAGTTCAAGATT
CCATCACCTGGACATATTCTCATATATGGGCCTCCTtacaacttgtgccaggaactgaagtggc
tgtggctccaaagagacgtgacagaaatctcaaagcaaaaaagagtcaggaaaaagaatgtaac
aatgtgaa
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1298
Transcript exons: 2736822-2737292,2737625-2738359,2738655-2738746
TACAACTTGTGCCAGGAACTGAAGTGGCTGTGGCTCCAAAGAGACGTGACAGAAATCTCAAAGC
AAAAAAGAGTCAGGAAAAAGAATGTAACAATGTGAAGGCTCTACTACGTGTACAAGAGACTGAT
AGATCAGCCTTTCATGAAGCTGATGTCAAAGGATTTGAGCTAAGGGTAGCCCTCACGTCTATTG
CCTATATTCATCCAGAAACTGCCAAGAAACACTCTCTAGAATCTCTTCAGTTGATTTCTGTATC
CCCTAGAATACCTTTGAAAGGTAGTGCAAAGAAGGATGAAGCCTTAAATATGAAAAACAGTGAA
GCTTCAAAGGTGGCCGAGAATGGTACTTCAAGCGCCAAGAAAGAGCCTCGTCAAGCAATTCTTC
GTCTTGTCTTTTCAGATTTAGCTGCTAAAGGACATCTAATGATGGTCGAGTCTCTTCGTCTCTA
TCTAGGAGCAGGCCTACACTCATGGGTTTACTTAAGGGGATGCAATGTGAATGAAGACAAAGAA
ATTCCTGCTCTTTCACTTTCTCCTTGTGTCTTCAAGATTTCTGAAAATGAAAAGGTGCTGGATA
AGGGTACGGATAGGCTTGGTAATAACAATTCTGTTAGAAAAAGCAGTCATCCACCGTCTGGCTT
GAGCACCTATGTGGATGTTGTCGACTGGTCTGTGCACGATAAGGTTGTTACAGCTCTTTCATCT
GAGGGTTTGCATGACGAAGGAAATCATGATAAGAATAAGAAAGGATTGGAATACCTTACTCGCC
TGTGGTCATTGGCACAGCTTGATGCTATGGCGTCAGTCACAGGAGTTGATGTTAGTTCGTTAAT
TGTGGGAAGAGAAACGTTTTTCCATTTCGAAGTAAGAGGGCTCGAATCTTATAAATCCATAGAC
GGGCAGCCTTCTGTTAATGATCGTTGGGAAAGTGGGAAGAAGGATAAACACACTCCTTTAGAAA
TTTTGTACGTCATGACGGTCTCTGATGAGTCTTTGCTTGGTGATAAATTCGCTGGGTATGATCT
TAGCCTGGATAGAAGTGAGAAGAGCGACAATGTGGTGCATATTGAGCCAGTGCTTGAGAAGATG
AATCTTGGCGAGCCTATATATTTAAAGTCGGCTAAAGAGACACACTGCAATAAAGGTGTTTCCC
CAGATATATCCTCCTTGACGTGGATGGGCCCAATCGTGTCGGATGTTATCAAGAGAATGACCGT
GTTGTTGTCTCCTGCAGCTGGAATGTGGTTTAGCAAGTTCAAGATTCCATCACCTGGACATATT
CTCATATATGGGCCTCCT

Genomic sequence TACAACTTGTGCCAGGAACTGAAGTGGCTGTGGCTCCAAAGAGACGTGACAGAAATCTCAAAGC
AAAAAAGAGTCAGGAAAAAGAATGTAACAATGTGAAGGCTCTACTACGTGTACAAGAGACTGAT
AGATCAGCCTTTCATGAAGCTGATGTCAAAGGATTTGAGCTAAGGGTAGCCCTCACGTCTATTG
CCTATATTCATCCAGAAACTGCCAAGAAACACTCTCTAGAATCTCTTCAGTTGATTTCTGTATC
CCCTAGAATACCTTTGAAAGGTAGTGCAAAGAAGGATGAAGCCTTAAATATGAAAAACAGTGAA
GCTTCAAAGGTGGCCGAGAATGGTACTTCAAGCGCCAAGAAAGAGCCTCGTCAAGCAATTCTTC
GTCTTGTCTTTTCAGATTTAGCTGCTAAAGGACATCTAATGATGGTCGAGTCTCTTCGTCTCTA
TCTAGGAGCAGGCCTACACTCATGTGAGTAATTTTTGCTTAAACATTCAGATGCTTTTGTTTTA
TGTACCTCCAGTATTTTGATGTTTGTGTAAAAATATCTGTTCAGCAATATCATTGAAATGTATG
GAGAGACTGAGCTGAAGTTAATTTGACTGGTTATTTGCAGTATGCGACACTAGGATTTTTTTAT
TTTATTTTTATTGTTGTGACCATCAGGAAGTAAACTTGTAAGGTATTTTGGAAGTTATCGTGCA
GGTTGAATAAAAAGCATCATTTTGCATTTTCCATTCTCAATCGAGCATTGTTACCACAGAAAAA
TAAATGTCTGAGCAAGAGTTATCACTTGTATGTAGGGGTTTACTTAAGGGGATGCAATGTGAAT
GAAGACAAAGAAATTCCTGCTCTTTCACTTTCTCCTTGTGTCTTCAAGATTTCTGAAAATGAAA
AGGTGCTGGATAAGGGTACGGATAGGCTTGGTAATAACAATTCTGTTAGAAAAAGCAGTCATCC
ACCGTCTGGCTTGAGCACCTATGTGGATGTTGTCGACTGGTCTGTGCACGATAAGGTTGTTACA
GCTCTTTCATCTGAGGGTTTGCATGACGAAGGAAATCATGATAAGAATAAGAAAGGATTGGAAT
ACCTTACTCGCCTGTGGTCATTGGCACAGCTTGATGCTATGGCGTCAGTCACAGGAGTTGATGT
TAGTTCGTTAATTGTGGGAAGAGAAACGTTTTTCCATTTCGAAGTAAGAGGGCTCGAATCTTAT
AAATCCATAGACGGGCAGCCTTCTGTTAATGATCGTTGGGAAAGTGGGAAGAAGGATAAACACA
CTCCTTTAGAAATTTTGTACGTCATGACGGTCTCTGATGAGTCTTTGCTTGGTGATAAATTCGC
TGGGTATGATCTTAGCCTGGATAGAAGTGAGAAGAGCGACAATGTGGTGCATATTGAGCCAGTG
CTTGAGAAGATGAATCTTGGCGAGCCTATATATTTAAAGTCGGCTAAAGAGACACACTGCAATA
AAGGTGTTTCCCCAGATATATCCTCCTTGACGTGGATGGGCCCAATCGTGTCGGATGTTATCAA
GAGTAGGTTTACTCTCTTAGCTTCATCTTGCTTGAGTCGTATAATTATGAGGCCGCACACACGA
ACATATATATCTGATAACATAGATTTTGCTTAACCTTTGTTCTTTTATGTATTAGCTTTTGTTA
TAGCATGTGTTCTAGTTGCATATCACATGTCTTTGAAGCAATTGTTTGACCTCAACTAAAATTG
CTTGATAATGTTCATATACGGTTGATCTTAACCTGCGTCTTTTAATGCATCTGGAGAATGTTTA
TGAACGGATCTGTTCCTAAAGCCAACAATGCTATTATGCAGGAATGACCGTGTTGTTGTCTCCT
GCAGCTGGAATGTGGTTTAGCAAGTTCAAGATTCCATCACCTGGACATATTCTCATATATGGGC
CTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.184032872
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015