Detail information of Os06g0505100_circ_ig.1


General Information
CircRNA Name Os06g0505100_circ_ig.1
ID in PlantcircBase osa_circ_030989
Alias NA
Organism Oryza sativa
Position chr6: 17940333-17940476  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0505100_circ_igg.1
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTGTTTGTGAGCCTTCAGCTAGCTCTCTTTGTGCAGAGACTTTAAGAACATGTACCCCCAAC
ATTTGTACctttaatgcagtttgaatcacagaaaacacatctgccagtaattccacaaatagca
ccataaaagaatgtgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTAATGCAGTTTGAATCACAGAAAACACATCTGCCAGTAATTCCACAAATAGCACCATAAAA
GAATGTGTTGCTGTTTGTGAGCCTTCAGCTAGCTCTCTTTGTGCAGAGACTTTAAGAACATGTA
CCCCCAACATTTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.210393519
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017