Plant Circular RNA Database

Detail information of Os07g0632800_circ_g.6

			
						 General Information
					
						CircRNA Name
						Os07g0632800_circ_g.6
					
						ID in PlantcircBase
						osa_circ_034906
					
						Alias
						Os_ciR2701
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 26247367-26249493  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, find_circ
					
						Parent gene
						
							Os07g0632800						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os07t0632800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0632800_circ_g.1 Os07g0632800_circ_g.2 Os07g0632800_circ_g.3 Os07g0632800_circ_g.4 Os07g0632800_circ_g.5 Os07g0632800_circ_g.7 Os07g0632800_circ_g.8 Os07g0632800_circ_g.9 Os07g0632800_circ_g.10 						
					
						Support reads
						5/3
					
						Tissues
						root/root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0632800-01:5

General Information
CircRNA Name	Os07g0632800_circ_g.6
ID in PlantcircBase	osa_circ_034906
Alias	Os_ciR2701
Organism	Oryza sativa
Position	chr7: 26247367-26249493 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, find_circ
Parent gene	Os07g0632800
Parent gene annotation	Similar to predicted protein. (Os07t0632800-01)
Parent gene strand	-
Alternative splicing	Os07g0632800_circ_g.1 Os07g0632800_circ_g.2 Os07g0632800_circ_g.3 Os07g0632800_circ_g.4 Os07g0632800_circ_g.5 Os07g0632800_circ_g.7 Os07g0632800_circ_g.8 Os07g0632800_circ_g.9 Os07g0632800_circ_g.10
Support reads	5/3
Tissues	root/root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0632800-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGAACCTAAGTCAATGGCCACGTACATATGTCAATCCACCATGTTCCTTGAGTAGCTCGATCAT
AGCATGCCTCTTTGCACCCTCCGCATCAGCAAGTGGctggcaatgtctagtgcgaaattaacag
cagttgctggggcaagtgcacctttctccttcaggtattgatgaaggtcgccctggaaaacaca
tttgaact

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 488
Transcript exons: 26247367-26247446,26247529-26247649,26247853-26247947,26
248595-26248711,26249419-26249493
CTGGCAATGTCTAGTGCGAAATTAACAGCAGTTGCTGGGGCAAGTGCACCTTTCTCCTTCAGGT
ATTGATGAAGGTCGCCTCCTCGTAAAAACTCAGTAACGAGCATTAAAGGCTTGGTTTCTGTGAC
TGCTCCAAGGAACTGCACAATATTTGGATGTCTCAGCTTTATTAGCAAGTTGACTTCATGCTTG
AAATCTTGTATCACCAGCCTGTCATCAGATAGAGATGGAAGAATGCGCTTGACAGCAATAGGTG
TTCCTCGCCAGTTGGCTTTCAGAATTTCACCAAAAGAGCCCTTTCCGATGATAACAGCTTTTGA
GAAATCCAACTCAAGAGGGTTAATCTCCCAGTCAGCCTTGTTTGTTAGGGGTGGTGGAATTGTC
TTTGGTTCAAAATGACTTCCAGTTTTCCCATATGTCAATCCACCATGTTCCTTGAGTAGCTCGA
TCATAGCATGCCTCTTTGCACCCTCCGCATCAGCAAGTGG
						
					

						Genomic sequence
						
							CTGGCAATGTCTAGTGCGAAATTAACAGCAGTTGCTGGGGCAAGTGCACCTTTCTCCTTCAGGT
ATTGATGAAGGTCGCCCTGGAAAACACATTTGAACTCAGCATTTGCGAGTATTCCAAACAGTCC
AAATGACAAGATATTATTACAAAAGAATACGCACTCCTCGTAAAAACTCAGTAACGAGCATTAA
AGGCTTGGTTTCTGTGACTGCTCCAAGGAACTGCACAATATTTGGATGTCTCAGCTTTATTAGC
AAGTTGACTTCATGCTTGAAATCTTGTCTGCATACCCCAAAAAAACTGATGAGGAATCATTCCA
AGAAGCAAACATGTTACACAAAACTAGAACTGCTTCTATTCAAACCTTGAATATTAGTTAGTTA
ACCAGAATACATGCAAAGTACATGTCCTAGACCCCTAGTTATTCAGTTGGAATACTCCAAGATT
AATAAATATTAGTGATTAAGTAGATATAGTTCACTTACATCACCAGCCTGTCATCAGATAGAGA
TGGAAGAATGCGCTTGACAGCAATAGGTGTTCCTCGCCAGTTGGCTTTCAGAATTTCACCAAAA
GAGCCCTGCAGTAGTTGAGATGTTTGGTTAACTCAAAATAACACAACATTAAATGGACTAGTAC
ATGGTCACAATGCAATGGGTATGTTCATGAACTTCCTAGTACGGTTAACTTTTATTTTCATTTG
TTTATTTAAACAGCCAAAACGATCTTTTATGGCTTCAAGCCATGCTTAACAGTTAAACATCTGT
TAATATCCGCTCATGTATACCAATTTCTGCCTCTCAATAGGCCAGTTCAAGAGGTACAAATCCA
GTACCTCTGAATCTCAGTTGGCAAAATATTCAGAGAGTTAGACAGTAATTAAAAAAGGTTTTGA
TTTCATTGTAGTAGGAACAAACCAAATGCTGCAGAAATTGAAACTTCAATATGTTAGTGATCAA
AATTTCTATCTAGAAATGAAAACTGAAAGCGCACAGCTGGCTCACAGCTAATATAATGGCAAGT
TTTGAACACCCAACTATCTCTATTTGCATATAACATCTAAAAAGATCATCCTGCAATCAATTTA
CATCAATTGTGTGATCGATTCTCAGTGTCAGTGTGTCACTACTTCCTATGGATAACCCCATTCA
GTTTACTTTCATAGCAATGGTCATGTTTTCTTACCAATGATTTGCATGAAACTAAGATAATTAG
GGAATTATATACCTTTCCGATGATAACAGCTTTTGAGAAATCCAACTCAAGAGGGTTAATCTCC
CAGTCAGCCTTGTTTGTTAGGGGTGGTGGAATTGTCTTTGGTTCAAAATGACTTCCAGTTTTCC
CCTACAGGAGAAACAAAATCAGAGGAATCCAATGTATTTGAGCACAATATCATACTGCATAAAT
CAATAAGCACAAAAAGATTAATTAGAAATTTCTACCCTAAATAGAAGATTTATTTTAACTGCAT
GGAACATAACAATGTAGTTGTGCTCAAGATGCACCAAAGTTGCACATGAAACGAAAATAGCAAA
AAAGGTTCTATAAAACTCATTCATAGCATATTCGGTATGATTCCAAAAAGAACAATATCACAAT
ATCAGCATCCATAGCATATCCAGTATGATCTCCAAAAGAACATCATCAGAGCTTTCATTGACAA
TGATGAATTTGTTGTACATACTGCAGTTGCTAGCTGATGCTTGTGTAGCACCACCACAACTGAA
TCCTTTGGTAACTCGTCTAATATTACGCGAAAATTGCCACTGGCACATCCAAATACCCTGTTTC
TACACTAATAACAATATTTGCGACCATGTGCCTGGATCAAGCTTATAAACATTATGCCAAGAAC
AGCTGCAGAGCGATATACAGGGAACTCACCCACTAATTCCATAACATAGAGTGACTGGTGGAAT
CGGAATACCTGGTGTTCAAGTTAGAAATTTAGTAATGTTGAGCTAACGGTTAAACCTAAATTCC
CCTATTACTTTGCTAGGCAAATAACCAAGACAGACTCTCAAACTGAACCTAAGTCAATGGCCAC
GTACATATGTCAATCCACCATGTTCCTTGAGTAGCTCGATCATAGCATGCCTCTTTGCACCCTC
CGCATCAGCAAGTGG
						
					

			
		

Sequences
Splice junction sequence	TGAACCTAAGTCAATGGCCACGTACATATGTCAATCCACCATGTTCCTTGAGTAGCTCGATCAT AGCATGCCTCTTTGCACCCTCCGCATCAGCAAGTGGctggcaatgtctagtgcgaaattaacag cagttgctggggcaagtgcacctttctccttcaggtattgatgaaggtcgccctggaaaacaca tttgaact
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 488 Transcript exons: 26247367-26247446,26247529-26247649,26247853-26247947,26 248595-26248711,26249419-26249493 CTGGCAATGTCTAGTGCGAAATTAACAGCAGTTGCTGGGGCAAGTGCACCTTTCTCCTTCAGGT ATTGATGAAGGTCGCCTCCTCGTAAAAACTCAGTAACGAGCATTAAAGGCTTGGTTTCTGTGAC TGCTCCAAGGAACTGCACAATATTTGGATGTCTCAGCTTTATTAGCAAGTTGACTTCATGCTTG AAATCTTGTATCACCAGCCTGTCATCAGATAGAGATGGAAGAATGCGCTTGACAGCAATAGGTG TTCCTCGCCAGTTGGCTTTCAGAATTTCACCAAAAGAGCCCTTTCCGATGATAACAGCTTTTGA GAAATCCAACTCAAGAGGGTTAATCTCCCAGTCAGCCTTGTTTGTTAGGGGTGGTGGAATTGTC TTTGGTTCAAAATGACTTCCAGTTTTCCCATATGTCAATCCACCATGTTCCTTGAGTAGCTCGA TCATAGCATGCCTCTTTGCACCCTCCGCATCAGCAAGTGG
Genomic sequence	CTGGCAATGTCTAGTGCGAAATTAACAGCAGTTGCTGGGGCAAGTGCACCTTTCTCCTTCAGGT ATTGATGAAGGTCGCCCTGGAAAACACATTTGAACTCAGCATTTGCGAGTATTCCAAACAGTCC AAATGACAAGATATTATTACAAAAGAATACGCACTCCTCGTAAAAACTCAGTAACGAGCATTAA AGGCTTGGTTTCTGTGACTGCTCCAAGGAACTGCACAATATTTGGATGTCTCAGCTTTATTAGC AAGTTGACTTCATGCTTGAAATCTTGTCTGCATACCCCAAAAAAACTGATGAGGAATCATTCCA AGAAGCAAACATGTTACACAAAACTAGAACTGCTTCTATTCAAACCTTGAATATTAGTTAGTTA ACCAGAATACATGCAAAGTACATGTCCTAGACCCCTAGTTATTCAGTTGGAATACTCCAAGATT AATAAATATTAGTGATTAAGTAGATATAGTTCACTTACATCACCAGCCTGTCATCAGATAGAGA TGGAAGAATGCGCTTGACAGCAATAGGTGTTCCTCGCCAGTTGGCTTTCAGAATTTCACCAAAA GAGCCCTGCAGTAGTTGAGATGTTTGGTTAACTCAAAATAACACAACATTAAATGGACTAGTAC ATGGTCACAATGCAATGGGTATGTTCATGAACTTCCTAGTACGGTTAACTTTTATTTTCATTTG TTTATTTAAACAGCCAAAACGATCTTTTATGGCTTCAAGCCATGCTTAACAGTTAAACATCTGT TAATATCCGCTCATGTATACCAATTTCTGCCTCTCAATAGGCCAGTTCAAGAGGTACAAATCCA GTACCTCTGAATCTCAGTTGGCAAAATATTCAGAGAGTTAGACAGTAATTAAAAAAGGTTTTGA TTTCATTGTAGTAGGAACAAACCAAATGCTGCAGAAATTGAAACTTCAATATGTTAGTGATCAA AATTTCTATCTAGAAATGAAAACTGAAAGCGCACAGCTGGCTCACAGCTAATATAATGGCAAGT TTTGAACACCCAACTATCTCTATTTGCATATAACATCTAAAAAGATCATCCTGCAATCAATTTA CATCAATTGTGTGATCGATTCTCAGTGTCAGTGTGTCACTACTTCCTATGGATAACCCCATTCA GTTTACTTTCATAGCAATGGTCATGTTTTCTTACCAATGATTTGCATGAAACTAAGATAATTAG GGAATTATATACCTTTCCGATGATAACAGCTTTTGAGAAATCCAACTCAAGAGGGTTAATCTCC CAGTCAGCCTTGTTTGTTAGGGGTGGTGGAATTGTCTTTGGTTCAAAATGACTTCCAGTTTTCC CCTACAGGAGAAACAAAATCAGAGGAATCCAATGTATTTGAGCACAATATCATACTGCATAAAT CAATAAGCACAAAAAGATTAATTAGAAATTTCTACCCTAAATAGAAGATTTATTTTAACTGCAT GGAACATAACAATGTAGTTGTGCTCAAGATGCACCAAAGTTGCACATGAAACGAAAATAGCAAA AAAGGTTCTATAAAACTCATTCATAGCATATTCGGTATGATTCCAAAAAGAACAATATCACAAT ATCAGCATCCATAGCATATCCAGTATGATCTCCAAAAGAACATCATCAGAGCTTTCATTGACAA TGATGAATTTGTTGTACATACTGCAGTTGCTAGCTGATGCTTGTGTAGCACCACCACAACTGAA TCCTTTGGTAACTCGTCTAATATTACGCGAAAATTGCCACTGGCACATCCAAATACCCTGTTTC TACACTAATAACAATATTTGCGACCATGTGCCTGGATCAAGCTTATAAACATTATGCCAAGAAC AGCTGCAGAGCGATATACAGGGAACTCACCCACTAATTCCATAACATAGAGTGACTGGTGGAAT CGGAATACCTGGTGTTCAAGTTAGAAATTTAGTAATGTTGAGCTAACGGTTAAACCTAAATTCC CCTATTACTTTGCTAGGCAAATAACCAAGACAGACTCTCAAACTGAACCTAAGTCAATGGCCAC GTACATATGTCAATCCACCATGTTCCTTGAGTAGCTCGATCATAGCATGCCTCTTTGCACCCTC CGCATCAGCAAGTGG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.223226853

Conservation Information
Conserved circRNAs	NA
PMCS	0.223226853

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26249462-26247432(+)
26249459-26249456(-)
						
						Potential amino acid sequence
						
							MPLCTLRISKWLAMSSAKLTAVAGASAPFSFRY*(+)
MIELLKEHGGLTYGKTGSHFEPKTIPPPLTNKADWEINPLELDFSKAVIIGKGSFGEILKANWR
GTPIAVKRILPSLSDDRLVIQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFLRGGDLH
QYLKEKGALAPATAVNFALDIASHLLMRRVQRGML*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26249462-26247432(+) 26249459-26249456(-)
Potential amino acid sequence	MPLCTLRISKWLAMSSAKLTAVAGASAPFSFRY(+) MIELLKEHGGLTYGKTGSHFEPKTIPPPLTNKADWEINPLELDFSKAVIIGKGSFGEILKANWR GTPIAVKRILPSLSDDRLVIQDFKHEVNLLIKLRHPNIVQFLGAVTETKPLMLVTEFLRGGDLH QYLKEKGALAPATAVNFALDIASHLLMRRVQRGML(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os07g0632800_circ_g.6

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