Detail information of Zm00001d007529_circ_g.5


General Information
CircRNA Name Zm00001d007529_circ_g.5
ID in PlantcircBase zma_circ_001247
Alias circ546
Organism Zea mays
Position chr2: 234006366-234008610  JBrowse»
Reference genome AGPv4.38
Type   ei-circRNA
Identification method CIRI
Parent gene Zm00001d007529
Parent gene annotation Protein phosphatase 2C family protein
Parent gene strand +
Alternative splicing Zm00001d007529_circ_g.2 Zm00001d007529_circ_g.3 Zm00001d007529_circ_g.4 Zm00001d007529_circ_g.6 Zm00001d007529_circ_g.7
Support reads 5
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered Zm00001d007529_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAAGCTTTTGCAAACTTTTTTGGTCTACTTGACTCCCTTCCGCATAATGGAAGCAAACCAAA
TGGTTCACACTCCTTTGGCAACACGATCGATTTCAGgatacggtgtaatatcaacacctgaatt
gacaggctggcagattctgtcagaaaatgacagttttcttattgcgtcatctgatgggatcttt
gagaaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATACGGTGTAATATCAACACCTGAATTGACAGGCTGGCAGATTCTGTCAGAAAATGACAGTTT
TCTTATTGCGTCATCTGATGGGATCTTTGAGAAAATGACTATGCAAGATGTTTGTGACCTAATG
CTGCATGCAAAAATTCGTGTTAAACATGATTTTGGATCCTCTGCCATAACACAACGTAATTTGG
CAGATTACGTAGTTCATGTTGCTTTACAGAAAGGCACAACAGACAATGTGGCTGCTGTGGTTGT
TCCATTGGGATCACCTGGTAGCACTGGTACTACATTAAAAGATTCGTCCCAGTTCGAAGAAGAT
CTCAAGATATCTATTTCTCCAATGTTGAATGTTCCATATGGATTGAAGCCTGGTAGTCTTGCTG
ATCATTGACTGTATTTTGTTAATTGTATTTGTAAGCACTCCATAAGTTTGTGCGTTTCCATATT
ATGTAATTGTGTAGTAAATGAATTTGTTTATAATTTGGGTTTTTAATAGTTGCAAATGGCCAAA
CAATTTGCTGATATTGTGCATTGTATTTTCTAAACAAAGTCTACATTGTAGCCAGTTGATTCAA
TCCTTATTATTAACAATATAGGAGCAATCTTTATATGCATGTCAAATCCTCACAGGAGAGCATT
CATGCCCCTTTTATCATAATTCTGTATTGGTATCCCTCTTCACTTTTCTGTTGCTGCCATGCTG
CCCTAGTTTTTCTATGCTCTTTCCATATCTGCAAATCCTTGCTCCTTACTCCACCTATTCGACT
ATGTCACTATACATGGTACACCTTAAGTTGAGGCCAAGCTCTCTTCTGAAGTCATTGTCCTTAG
TTTTACTTACATGTATTTTATTTTATGACTAGTTGATGGAATCTGTTCATCTGTTATTGGCAAG
GAGTACTTCAATTGCCCATGAACTCCTTATAATTGGTTTTTACTTGTGTATTTTCGAATGGCTA
GCAGATCATGGACATAGTTCAGCTGTCATTGACATGGAGTATTTCAAGCGCTCATCAATAAAGT
TCCAGAGGTTCTTGGTAAGCGCTCATCAATACAAATGCATTATACAATTTTATGCCATGTGAGT
TCATCTTTGTTGTTATTATCTGTTTCATTTAGTATATAATTTCTTGTTTAAGTTTCTTGTGACG
AGTTGGACGATGCTATTTGAGTTCATTTGCATACTCTGTAATTAGGTTGAAGCAAAACCTAAGA
AACTTGGTTGTTTCTATTTATCCGAGAGTCTGGATGAAGATATGGACTATATATTTAGGGTGCC
GGAAGCATACCAGCGTGAAGAAGTCCATGACTTCAACCACATACCAGCTGAGACTGCCTTATAT
TCTGATGGTTAGTAGTCTGTTTTTAGATACTCATGGATGGGTCTTTTCATCAATAAATCCTTTC
GGTTGTTCCTTTTTCTTTTGTGTGTGTATATGTGGTGGTGGTGATGGGGGTGGGGTGGGTTAGG
TAGCATGTTGGAATCTGTAACTTTCTTGTTTGAATGCCATATCATCCAATGATCCAATCTTAAC
TTGAGGACCCGGTTGACACTCGGCTTGCTGCCCTCAAACCACACGAGTTTCTGAACTTCAAAAT
CTCCCAAGCCACTATGATGAAAAGAATGTTAAGCCCCTTCCGTACTTCTGCATACCTCCAGGAG
CTTTCTAGCAGGTTGCAGGCCCCAGCCGCCTAGGTTTGGTGGTCCGGTCGTGTCCCTTCTCCTG
TGAGAAGTCCCTAGTGTGTTGTGTTCGGGATGGGCTTCTTATGCCCCATTTTACTTGACTCTTT
CTTTCTTAAATGAAATGACACGCAGTTCTCCTGCGTAGTTCGAGAAAAAATATCATCCAATCTT
AACTGTTATAATATTCATCTTCGAAGACTAACCATATTATACTTGCCTTAATTAGGGGGACATC
CAACACCATTGGGCACCTTCTAGAAACAGTTAATTGCTGAAATTGGTGCAAGAGAGGGCTGTGG
AATTCTGATGTAATGATTGATTTGTTTGATAATGTCTTTATCTTTTTCATGACTTTGGTTGTTC
TCTTCATTTTTATAAGGTAATCTGGAAAAATACAAGGACAAACACTTTTGCTTGTACCTTGGTC
CCGAAGATGGCGAAATGGGACAGTGCAATGGTCCTGAAGCTTTTGCAAACTTTTTTGGTCTACT
TGACTCCCTTCCGCATAATGGAAGCAAACCAAATGGTTCACACTCCTTTGGCAACACGATCGAT
TTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.021499436
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b