Detail information of Os06g0526700_circ_ag.1


General Information
CircRNA Name Os06g0526700_circ_ag.1
ID in PlantcircBase osa_circ_031053
Alias Os_ciR3427
Organism Oryza sativa
Position chr6: 19528029-19532231  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os06g0526400_circ_ag.1 Os06g0526400_circ_ag.2 Os06g0526600_circ_g.1 Os06g0526600_circ_g.2 Os06g0526600_circ_g.3 Os06g0526700_circ_g.1 Os06g0527100_circ_g.1 Os06g0527100_circ_g.2 Os06g0527100_circ_ag.1 Os06g0527100_circ_g.2 Os06g0527100_circ_ag.3 Os06g0527100_circ_ag.4 Os06g0527100_circ_g.5 Os06g0527100_circ_g.6 Os06g0527100_circ_ag.7 Os06g0527100_circ_igg.1 Os06g0527100_circ_g.2 Os06g0527100_circ_igg.3 Os06g0527100_circ_igg.4 Os06g0527300_circ_g.1
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAACAGGGATTCAACAAATGATACCTCATTTCGCATAACATCCCAAAGGCCATCAGTAGCAAG
AATCAGGTATTCCAAGCTTTCATCGACCACTTTTTCctgaatgtttggttctgctttaacatag
cgcttcattaaacgattgccaaatgcacgggacactgccagaattccatcaaccctccatatat
ctgttgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAATGTTTGGTTCTGCTTTAACATAGCGCTTCATTAAACGATTGCCAAATGCACGGGACACT
GCCAGAATTCCATCAACCCTCCATATATCTGTTGTGACATGATCAAACTTTTCAGGTTTTCATT
CTTACTCGTATTCGATTAAATTAAAGCTGGCTAAATACATTAGGAGTATTCTGATAGTTAAAAG
TGCTTACCATCTGAAACAACAATGCCTCCAGCATCCTCAATTCTCTTTCGCTCATCTTTTTTGT
TAGGTTTGTGATCTTCAGACAGTGGGACAGCTAAAAAGCATGGAAATAAACAAGATTGAAATGT
AAGAACAAAAAAGAGAATTCCACAGTATCTAGAGTATTTGGAACGTGCCAATTTCTGAAAATGG
TATAGAAACATATCAAAATTGGTGCAATTTGATAAAAACTACTAGAGACAAGATCCTTCGCAAC
ACAGGAAAAAAAAGAAACACTTAATTTTCAGTTGACAAAGAGGTTTCAGGGCATACTGAAAAGT
AACCATTTATAGCTACAACAATATGGCAACTTGAATGGGAGTTTCTTCACTAACAAAGAAACAC
AACCAATAAAATATTACCTTTTCCGGCTTTTAGAGCAACGGCACGTGAATCACCAACATTAGCT
ACATATAGGCGGTTGCCAATCAAAATGGCAGCCACTGCTGTTGAACCATCATCCCTATAACGAT
CAGAAGATATCGACTGTAGGAAATCAGCGTCAGTTTTCAGAAACGTTTGGTCTGCATTTTGCAA
AAGCAGTTAACGAAATGAGAACATTATTACTTTCTGGCTCTGAATCAGAACATACAGAAGAGGT
ACAGCCGAAATGAAGGGGAAAAAACATTACTTATAGCGAGCTTTGTGTCTTTCAGGAACTTAGG
ATGCTTCACGAGGTTTTTAAATAGATGTTTCTTCAGATATTCAGCAGCACGTGGTCCTCCATGA
CCTAATGTATGCAATCTTCAGACAAAGATATGATAGGGAACAAAATTACTAGTGCAACTTAATG
AAAGAAAAGATTGAATACACTACCATCAAATACACCAAATAAGCTGACTGTTTCTCCGTTGACC
GTGGTTGACTTTATGCTCAAGCGATCCTCCATAGAAGGCCTCCTCCCCTGGAAACTTGAATATC
CCCAGCTCAATTTACCATCCTTACTGCCAAAAAAAAAAGTATTTGATATCATGTCCTCTCAATT
CTCAAATCTCTAATAGAAGGATTATAAGTAGAGAAATTCGAAGGAATTCTGAAATTGCACAGAT
AAGCCAATTTCAACTGGGCAGCAGGTAAAATACACACCTACAGCCAACTCCATCGCCGTCAAAT
CTCGACCTCGGCGGCTGCCGCTTCGAGTTCCGCCCCCTCCGGCCTCCCCTCGAGGCAGCCGGTC
CGCGTGAGGATGCCTCGCCTTCGTCGCCGATGCTGACGCCGAGGAGGAGCGAGTAGAGCTCGAC
CTCGTCGTCGCCCAGGCCCTTCGAAGCAGCTCCGGCGCCGCCGCGCGAGGAGAAGAAGCGGGGG
GCGGAGCCGCCATTCCGCAGCGGGCCAGGGGCATGGAGACTGGGGTGTGGGCCCGCGCGGCTGG
AGGCGGCGGACGTCGACGAAGCCGCGGCGCGGCGGAGGAGGCCGAGGAGGTGGTGGCGCCGCAT
GGCGGAGGCGGAGGCGGAGACAGCGGCCCTGGGTTTAGGTTTTTAACGATTTTTCTTTTTGCAA
CCGCTAAACAACTGTCGCAAAAGTTCCCTTCAAAATTTTTTTTTGGGAGTTTTAGAACTTTTTT
TAAAAAAAAATTAAAAATATAACTATTATGAAACATATTTTATTGTGGACGATGTTTCCTACTG
AGACAATGGACACTCTCAACGAATGGATCCTCCACGTGCTACGCTAGTCATATATCAAAGTTCT
TCCGTGCGTCTTTATCATGGCGGTAGAGACTCTTTTTTGTTTTTGGTTGGACGATTCCATAAAT
AGAATAAAAAGATAAATAAGATCAAGTAGAACCAGTAAGTATGAGTGGAAAACTTACTATAGAA
AGAAGCTTACGCCAGAAGAAACCAAAAGATATCTTATCACGGAAGGAAGCTTGCAGCGTAAGCC
AGCAACTTGTAGTGGAAGCCAAAAAGTTAGCTTTTAGGAGAACCCAGCTTACACCGTAAATCAT
CAGCTTTCTCCGCCTATAAATAGGACCCTCAAGGTTAAGGCGAGATAGATCTCTTTGGAGCACC
TCGACTCTCCTTATGTAGATTGTAATCAATTTCAAAAGAAATAAGGCTTTCACTCGCTTATAAT
TTCTGTGGTCTACAGCTCTGTGTTCATCTGTTTGTGTGCTGATCAGTAGAATAGAAACTACAGT
TATGGTGTTTACTGTAATATAATTATACAACATATATTTTAATTAAATTGTAACTAAATTGTAG
TTATAATATAATTACCCTACAACTATATTTTAATTATATTTTCCCCTCTGTATAACTTAGGTAT
AAAGCTACATATATTTTTTTATACAACTTATCTTATTATAATATATAGTTATGGTGAAATTACA
TCATACTATAGTTAGATTTGATTTTTTTTCACTCAAAAAACTTGTGGTAGTTTTTAGATAGTCC
TTTTTTGATTTTTTTTAATAAATCATTTTGGATATTTTGCATTATCATATCGTTGAAGCAAAGT
TCAAAACAAAAGAAAGAGTCTTGATTTAGAGCAGCTTAAATTGCTTGGGCAGTGTAAGCCGTTA
CGAACATACTTACCATTAAAAAAAGTAAAACCCGTAAAAACCAGACCTAGAAGTTCTCTAAATT
AATAAAAAAATTAATTTAATAAAAAAAATACTACAGAGATCAGTATAATATGAAATAATTCCCA
CCAAATCTTAAGTCTAAGCTCAACTTTATTCTAAAGAATAAAAAATCAGGTTAATAGTATAAGT
TTGAGGTTTGGTGAGAATGTATTCATATCAATACCTATCTCTAGTATTTTTTCATGAAATTATA
AAACTTTTTATGTTCAACTTTCACGTGTTTTCACAGGACATATACCCTACTTACATAAGCAGAA
GTGCAAAAGAGATGATTTTTTTCTTTTCAAAATAAATATTGATTTTTCCTTTCAAAATAAATAT
TGATTTTTTTCCTTTCAAAATAAAGGTTCTTCATGTGAAACATGAGTTTTGAAGAAGAAAGAGC
TTCGCAATCGTGATTATAAGCTTGCGATGCTTGCTGCTGCTGCTAGCAAATAGGCATGAAAAAT
CGAAAACGATATTATTTTTTATTAGTTTTTAAAAAAGGTAACGGTCAGGAATTTAGTTTTTATA
TTAATAAAATTAAATATTTAGTGATAATTTTAATATGACGTATAGAGAAATTAAAAAAAATTAC
AGAAGAAATAATATTATTTTTTTTGCAAAAATGATATTGGTATGATAGAAAAAATTATATACGG
TTTTCATCCCTATTAGCGACGCCGGGATTTGGCAAACAATAACTAATGAAGTATATAGGCACAG
ACATTAAATCATTAGCCACCTAAAAAATTTAGAACATTTCTTATGCTATAGATAACTTAATATT
TCAGGGCCGGCTACCCCTAATAGCAAGAGATCCGAAACCGAAATCAAACAACCATAAGACGTTT
CGCTAGTAAACTGTGCACGTCAGATTTAAAAGCTTCCTACATGACGAAAAAAACGACTCAACCA
ATCTAGTAATAATCTTGTAGAACCGCGGATCAGGGGACCAACTCTCGTTTCAAGATATCTGGTG
ACAAAACTTTGTTAACATCAGTTGCTGTTGGTTGATTTTCCATGGTGAAACTGCAGCACGATGC
ATGTGATGTTGTCTAAGGTAAGCCGAGAGTGGGCGACTTCTGTCAGCTTCATGGCTGCTGCTTT
GGGTCCATCTTGCGCTTTCAAAAGAGAAACAGCATCCTTGTTGACAAAAGATGTAAAATGCTAG
TTAGCATTGGACCGAATGAGATACGCGCTCGCACGAGGGCAAAGCTGTGTGTCAGGGGTGAACA
TAGTGGATGTCATTCATTGGTTTTCATGTAAGCAGATATTTCTGCTGTTTTTTTCTAGGTCGCA
TAATCAACAAACAGGGATTCAACAAATGATACCTCATTTCGCATAACATCCCAAAGGCCATCAG
TAGCAAGAATCAGGTATTCCAAGCTTTCATCGACCACTTTTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.212356866
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015