Detail information of PGSC0003DMG400013291_circ_ag.3


General Information
CircRNA Name PGSC0003DMG400013291_circ_ag.3
ID in PlantcircBase stu_circ_001500
Alias chr11:364578|369316
Organism Solanum tuberosum
Position chr11: 364579-369316  JBrowse»
Reference genome 3.0.38
Type   ag-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400013291_circ_ag.1 PGSC0003DMG400013291_circ_ag.2 PGSC0003DMG400013291_circ_ag.4 PGSC0003DMG400013291_circ_ag.5
Support reads NA
Tissues stem
Exon boundary   No-Yes
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAAAAATACTCAATTGTAAGTAACACAACTCAGAAATCAGAACTTACATCAACATCCATCTGGT
CTGTGTTATCATTTGATGGCTCCACAACGCTCTTCCtctttattatttcttgcaattatgattc
tttgtcatatgatatcaccgtctaaagattccttttgagcaaactgaaaatagcatgagaaaat
gttagatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTTTATTATTTCTTGCAATTATGATTCTTTGTCATATGATATCACCGTCTAAAGATTCCTTTT
GAGCAAACTGAAAATAGCATGAGAAAATGTTAGATTGTGGTCCAAATTTGTTCTAAGTTATTCA
AACACTCAATGACAATCTAATATTTTAACAGTAAGATTGGGAAATTTTGAACAAACATGAGACA
AAATCTAATGTTATTTGGAAGGTAACTTCTTAAGGGATATATTTGCACGACTTCTAAAAATAGA
GACACCATAAATAGTGGTGTAAAGAAGGATATTTCTGTAATTGACAAGAGGTGCACCATAAATT
CACATAGAAGAAGCTCCAAATATGACACAAAAGGAAAATTCCCAACAAAGGAAGAAATTTGTAT
CTCCTTATCAACTTCAGGGTATTTGTTTCTTTCTGTGTTTTTTTAACCTCGGGTTTGCGGGTGT
TATCGTCTATTTGGGGATGACCACAATTTTCTATTGCACCGAAAATAATTGTGAAGCCGTCAAA
GAATTCAAAGACGATGGATGTTGTTGATCAGGTTACTTCATTTGCTGGTTGAACTTAGAATCTA
GGATTATTGGGTATGTCAAAAAGGTGTTTTTCCTGTGTTTAGTTTTACTCAAATTATTGTTAAA
AAAATTCAAACCCTGGTGGGAAAATGTAGCTGAACAATGAATAACGCATACAATCTCTGGAATT
TTTTCCTCACTGGTCTGGTCACCAGAATTCCCTGGAACTTTAGAGCACACCTACCCTAGTGAGA
CAAAAATCCAAAAACAAAGCCGACAAATCATTACCAAGCATCAATGGCTTCAATCATAGAACCA
CTAGAAAATAATGTGAGAAAACTAATTGATGCTTTTTTTTACTACCATGCCAATTTATGTATTC
ACTGAGTTATTTTTTCAAACTAGACACCACAACCATAGCCAAGGCACTAAACATATTGGAAATT
CCTAAAGTACTTCACCCATTTGTTGCTTACATGGTGCCACTGCCAATTGACAAATAATTTCATC
TGCTTGAAATTTTCTAATTTATTATTTCTCAGTAAATAGTAACAACATCAACATACCCGGTGTA
ATCCCACATGTGGGTCTAGGGAGGAGGGTGGTGTGTACGCAGCCTTGCCCCTACCCTGTGAAGG
TAGATAGGTTGTTTCCGATAGATCCTCGTCTCAAGTAAAGCATAACCAAATCAAATACATCAGC
AGAGAAGTCATGCTCAAAATAATGAAGAAGAGAACAATAGCAACAACAAATAATACGAAAACCA
AAGCAAAGAAAACATAGGTAATACTGAAGTCGAAGAATACGGTAGTATGAGAGTACTAATAACA
ACAAGGATAAGTAACTAGCCAACGCTCAACTACCTACTAATGTTCCACCCTAATCTCCATCCCC
ATCCTCCATATCTTCCTATCTAGTCTCATATCATCGGTAAGCTGCAATCTGCATGTGTGCTAGT
AATTTGATGAAATCATGAAATTTTCAAGATTTATCTTTTCTAAACTCTTAATTGAAATTGTTTG
ATATTTGAATACCTTAAAAAAAAATTGTATGATCACATTTTCTTTTTTATCTAGCCCATGGCAA
CTCAGGAAATACTTATGAACATCCTCAATAGGTTACCTGAACGCTCTCTTTTTTTATTCACATA
CAACAACATACCCAATGTAATCCCACAAAGTGAGAAATGAGGAGGATAAAGTGTACGCAAACCT
TAACCCTACCTGGTGTTAAGGAATATTGGAATGCATTTTCTTTATTATACATGATCCCGGGCTT
TTTCACGCCATACAAACTATAGGTTTGAGGATGGTGAACTCCTAATTCAATTCATACATTTTAA
TATTTTACAACATCAAAGGACCATTTGGATTTTGGCCATACAGTTCAGACTGTTTTCATTCAAA
AACAACTCAACAGTAAGTAAGAAATCACAACTCACCGGATCAATATCCATCATTATTTGATGCC
TCCCCCAACTTGAAAAGCTTTGCCTCTTCTTCTATTGAGCTTCAATTTGAATTCTAGGGTTTTT
TTATATAGCAGAAGGATTGCGCGGTTTGGGAAATTGGGAATGATAGATGGGCCGGTTCGGGTTC
TCCTCTCTAAATTCAAGTTTTTGCACCGGTCGGATTCTCCCTATTTTCGGGTCTCTTCCAAATT
ATATGGTTCAAATCTTAATGAGTCGTGATTTAAAGTTATTGAATTTTAAATCAGCAACATATAC
ATAGTCGATGAATTCTCAAGAATATAAAATTTTCCACTAAAGCAATTGAGTTCAATGAACTAGT
AGGCGACATTCTAACTTTACCCTCGACTCTAATTCTTTTCGTATATTTGATATGTAATTTCTTA
TTTCTTTTTTGCAGTGGCATATAATTTACTTTTAACATTATATTTAGTATAATTAAATATTTGC
TTATGTATGATTGAACCACTTTCTGTTGTTTTTTTGGTTACCATGTTACAACCTCTAGTTCGGG
TCGGGTCATTTTTAGTATACCATATGCAAAGTGAATTACCCAACAGTGATTGCAAGTAATCACA
TACGAGATACGACCTATACACAATCATAACATGCTTTTCTAGGCCGCTAAGTCAGGAATAGAGT
GTTAACGGTAGACATTACATCATGTTCAATGGAATAACGCTAATAGTCAAATAATAGCAATATA
CATGCCATAAGAAGCATAATCCATTAAGATCTGCCAAAAAGAGGAATTAAAGCCTTAACATATA
TCTTTCAAACAAAAGCATCAATAAGGTGTTAAGGTCTTCATTACGACCAACCTACTTTAACTCA
TCAAAATCTCAACAATAACAACAAGAAGAAGAAGCTATCAATATCTCACAAGAGCGGTAAGCTC
CTGAAGTAATATAACAAGACGTACATTCAAATTATCTCTTGTGAGAATTTCAGTTACTGTGCTG
GGGAATATTGGAAAAACAAATGTCATTCCTGATGATAACAGAAGCAATGCACTCTTGTCAATTT
CTCACATTCAACAAGCTGAGGAAACCTCTGTTCCTTACACAATGCGTATAGATTCTTTCTGTAG
ACACCTAAGAGTTAACAAAAGATATACATGTTTCATTTCTCCAAAACATCTCTGGTTTCTTTCA
AGCCAACTACTCCACATGATGGATAGACGAACACTTCTTTCTCCAAGATATCTGCTGGTATTAA
TTTCATGTCCCCCAGACCTGCCAGCTAAAGATGACATTGTACTCCAATACTGGTGATAAACTAA
GAAGAATACGAGAGTTGTAACATAACAAGAAAAGAAGAAAAAGAGTGTCTCAATCATACATAAG
AAACTAATATGTAAGTGATCTTGGAGAAATCAAGCTTTCTGTAAAAGCATGTGCATCTAATATG
ATATCACATTGAGGCCATGCTCCAAATGGTCCACTACGTGTCCTTAATCAACCCCCAACACCGC
ACCTGAATAGCACTTCACCATCCGCAAACCTATATTTCGGTATAGCAATAACAATATAAGGATC
TTCGATAGATAGCAATGGAATCCAAGATTCCTTGATACCATACTCTTTCAATACCCATAACTTA
ATAGTATGCTTACTCTGATCATAAAGAGAATTAGAATGAACACAAAGCATTCCATCCAACACTG
TAATGCCAAAAACATCCCTCGAGACTGAAATTTCCTCCTGTAAGGGAATCTCTCCGTACACTTC
ATTTGAAATACTAAACGAAACCACCACAGCATAATTTCGTGAAATACCAATCCAATGAAATGCC
GCATGTACAAATGTCAAAAACTGCACAGCAAACATCAGAGAGTAAATGCCATGAGGATGCTTAT
CACTTCTTCTCCAAGAGCCACCTTTCAGTGCAAGAATTTCACAAGGTAAATCGAAACCCTGATA
AATCTGAACAATCCTATACTCACCACTGGTTGAGTCATAACCCAAACCAAAACAAGGACTTTTG
TCCAGTGGAAATTCTGGAGAAGGAAGTACAATTGATTCTCTTGTGGAGGGGTTCCACAGAAAAA
ATGTGGAGTGTTCATTCAAATTATCAGGAACCTCCATAACAGCCAAGCCATCATAACAACAATG
GATTGTGCATTGCAATGGTGTAGGGTTTGAAGGGAAATCGAGTTTTTGTACATCCTCAACCAGC
TGAACCGGCGACAAAGGACAACAATACATGGAACATATACCATTCTTACGGCACCTTAGGCTAG
TAAGAAGTTTTTGAGAATCTTGATCATTCTTGGCACGACTGAGATGCTTCATCTTAAAGTATGG
CTCGGAGATCAACGTTTCCCAAAATTTTGACACACATTTGAATCGAAGTAGAGACTGCACAGGT
AACCTGCTAAGGATGTCCATAAGTATTACCTCTGGGAAGTGAACTGCCATGGCCTAGATAGGAC
AAGAAAGAGCGATCAGACAATTTTTTTTCAAGTATTCATATATTAGACATTTCAACCAAGAGTT
CAGAAAAGATAAACCTGAATTTGTTTTATTTCTTCTATCTACTATTTAGTAACAAATATAGAAT
TGAATATTTCAAGTGGAGAATACTGAAATTACTCGGCTCTTGGCAGTGGCACCAAGTACACATG
CCAAGCATCTAAGTCCCAACCAACAACAATTAAAAATACTCAATTGTAAGTAACACAACTCAGA
AATCAGAACTTACATCAACATCCATCTGGTCTGTGTTATCATTTGATGGCTCCACAACGCTCTT
CC
Conservation Information
Conserved circRNAs NA
PMCS 0.117753129
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018