Detail information of BGIOSGA000923_circ_g.7


General Information
CircRNA Name BGIOSGA000923_circ_g.7
ID in PlantcircBase osi_circ_002352
Alias 1:32892161|32894234
Organism Oryza sativa ssp. indica
Position chr1: 32892161-32894234  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA000923
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA000923_circ_g.4 BGIOSGA000923_circ_g.5 BGIOSGA000923_circ_g.6 BGIOSGA000923_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTTGATCCAGAGCTTCAGTTAGTGTTTTTTTGGTCACTTCATTTTCTTGCCTTTCAGCTACC
AATAAAGCCTCACTTGTGGTAGCATCTTCGACAAGTctttttatggtactctgaaggctatcag
attttctatctgagtcttcaagtttccttattaattcatcaatttccaaatgtgcttcagcaag
caatttta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTTTATGGTACTCTGAAGGCTATCAGATTTTCTATCTGAGTCTTCAAGTTTCCTTATTAATT
CATCAATTTCCAAATGTGCTTCAGCAAGCAATTTTAAGGTTGAAGCATTCTGTTCCCTTTCAGT
TAGCAACAAAGACTCCTTTGCTTCCACATTTTCCTCTAGTCTATCCACACAAGAAATGGGAACA
AGGCGTAGGGTTATGTCATTGAAGATAAAATATAAGGCTAGCGCTCTAAGTCAGTAAGAAAAGC
ATGACTTGATCCTATGAGAGATAACAGACCTCCTAATTGTGTCCTCATGTTCTGCTATACTTGC
AACATTGTCTTGCATTTCATCCAGTAATTCCTCAATCTCTTTCTGAGCATCAGCTAATTCTTTC
TTGGTCTCGTTGTTTTCACGTCTTTCTATGGCCAATAAGGAATCTATGTACGCTATTCTTTCTT
CAAGTCTATGGTCAAACAAGAGAGATATTACTAATAATTAGTTTTAATCTTACAATACTTGAAA
GCAAAGAGACTAAACCTTTTTACTGAATCCTCAAGCAGCATAATTTTCTTATTTGAATCCTCTA
CTCCGTTCATTAACTCCAGGTTTCTCTCCTGAACTTCAAGTAGCTCTTTTATGGTGTCATCATG
GCTTTGCTTTGTCATAAGCAGCAAAGAATCTCTTGCTGTTGCATCTTTTTCAAGTCTATACTTG
ATGGAATTAAGGAAATCAATGTTAGTACACAAAGGGGAACTCTAGTACCAGTTAGTGCACAAAT
CTTGAACTTTGCTGCTAGTTATGATAGGCTACCAATAAGTTAGAATAATGAGAAACAGACCTTT
CCACATTTTCCCGAAGCTGTTCTATGTTTTTCTCAGCTTCTTCAATTTTCCTATATAATTGTTG
ATTTATTTCTTGAGCTTCAGAAAATGCTTTCTTGGTTTGATCATGCTCTTGTCTTTCTGTTAAG
TAGAGAGCATCTGTTGTTGTTGCCCCCTCTTCTAACCTATGTTCAGGATTAAATTATAACAGCC
GCAATCTATAAAATCGATGGAGAAAATATATAGTCAAGCCGGACGCTACACCACACAAGGTTTT
CCAGGTTACACCCATTCAAAATGGGAAGCTACTTAGCATCTCCTGTGATAAGTCTCAAACTACA
ACCACTCGTGATTGCACAACTTAAATCAAATATCATAATGCTTAATTCCATTCACCCACTTTAA
AACTTCAGAAGCATAGAATTCTTCTTTCCTATGTGTACATCATTTATCAACAAGTTCCAGGTGA
TGGTGAGAAGGTCACCAGGCCTTCAACAGAGCAAGTGAACAAGGTCACCTGCTCCATATATTCA
CACTAATGTTCGAAGCTATACTTCTACCCCATACCAAAAAATATGCAGGTTATCCGCTGATAAA
TACTGAAAATTCCTATTATAAGTAATGTACTTCTTTAACAATACTAGTCATCACATCCCACAAA
AGAGGAAGTATAAGGAAGAGACGAGCACCACACAAAACTTCATGACAAAATCTATAATTACTGT
TTTAAAAATCTATACATCAGGATGTTTTGAAGGTACATGAAAACACATGCAAGTAAATTCCTGG
TACTAAGTTTAGGCAACAAACAATGCTTCCATGAAAAAAAAAAACAACAAACCTTTCTATAGTT
TTTTGAAGTAGGTCGGTTTTTTTATTAGCAGAAGAAATTTCCTCCAGTAATCCTTCAATCTTTG
CTTGCGCCTCTGCTAGTGCTTTGGATGTTGTCTCCTTTTCCTGACACTCTGTTAGCAGATCTGC
CTCTCTTGCAGATGCATTTTGTTCAAGTCTATGCCCATGGATTAAAAAAAAGGTAAAAAACTAA
AGCCACACAAACAGGTTTCATCAATGGTTTCTATTTTGAAGTAAACGGACCTTTGGATGTTATC
TTGAAGCTGATACACACTGTTTTTAGCACACTCGACCTCCTTAACTAATTCCTCAATTTGATCC
AGAGCTTCAGTTAGTGTTTTTTTGGTCACTTCATTTTCTTGCCTTTCAGCTACCAATAAAGCCT
CACTTGTGGTAGCATCTTCGACAAGT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021