Detail information of BGIOSGA032770_circ_g.1


General Information
CircRNA Name BGIOSGA032770_circ_g.1
ID in PlantcircBase osi_circ_008883
Alias Chr10:12883116_12883768(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 9464116-9464768  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA032770
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032073_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA032770-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGGAGGAGCAGCTACTAGCCACTGGGTCAGAAGTCTCCAATCTTTCAAGCACAGAAACTTTG
GAAACTAGAACTGATCCAATTAAATTAAAGAGAGAGgctcatgattcatgttccctccatcaga
ttggcagtgtccggatggctcttctctgatcaccagacgtaagagttaagaacagccacagcgt
tctccgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTCATGATTCATGTTCCCTCCATCAGATTGGCAGTGTCCGGATGGCTCTTCTCTGATCACCAG
ACGTAAGAGTTAAGAACAGCCACAGCGTTCTCCGTCCCATTGCACTTATTTAAGATTCTAACTT
TGATGTTACTATCTTGGGTTCTTGAATTGTCAGTGGGCGCAAGGGTCCCGGGAGCTGTCCTGGA
TGCCACAATGTACAGTTTATCTGATATCTTCTAATGACATATATGAGGTCAGGAATAGTTGGAT
CCTGTTTCTTGCCAAATTACTAAGTGTGCATTTTGTTTACCTGACAGGGCATGGATAATGCCGA
TAAGACTATTGCTTACACGAATCAGGATGGTCGGATCAGGCTGTTCAAAGTTACCACAAGAGAA
TTCTTGTCGTCCTCTATCTGGAAGAATCCTTTGTTGCCGAAAGATACCGAGCCGGTAGCTGAAA
TAGTATGTTGTGAACAAAAACGTGTTTTTATCTTGCCAAGTCATTGCAATTTTTCGGTTTACAG
TTCTCACTGCTCTTTCTTCTGCTGCTGTAATAGCAAGAGATTGCGGAGGAGCAGCTACTAGCCA
CTGGGTCAGAAGTCTCCAATCTTTCAAGCACAGAAACTTTGGAAACTAGAACTGATCCAATTAA
ATTAAAGAGAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021