Detail information of AT1G55690_circ_g.6


General Information
CircRNA Name AT1G55690_circ_g.6
ID in PlantcircBase ath_circ_007577
Alias 1:20810092-20811331
Organism Arabidpsis thaliana
Position chr1: 20810092-20811331  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT1G55690
Parent gene annotation Phosphatidylinositol/phosphatidylcholine transfer protein SFH13
Parent gene strand -
Alternative splicing AT1G55690_circ_g.1 AT1G55690_circ_g.2 AT1G55690_circ_g.3 AT1G55690_circ_g.4 AT1G55690_circ_g.5 AT1G55690_circ_g.7 AT1G55690_circ_g.8 AT1G55690_circ_g.9
Support reads 2
Tissues flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G55690.3:6
AT1G55690.5:6
AT1G55690.2:6
AT1G55690.4:6
AT1G55690.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCTAGTATGGTATCTGTCCCATACTCTTTTCTCCATCTAAGCATTTCTTCCCACAACTGGGTG
GTTTTTTCAATGTTAAGATCCCTAGCTTTCAAAAACcttcattatttcaggatcattccagggt
cctttattagagcgaagacaccctcctccatcaccaaagcaagagcatgaacctccaaggaatt
ctggcaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCATTATTTCAGGATCATTCCAGGGTCCTTTATTAGAGCGAAGACACCCTCCTCCATCACCA
AAGCAAGAGCATGAACCTCCAAGGAATTCTGGCAATTGACTAAAGCACAGAGCACCAGAGCTCA
TAAGTATTGGCTAGACATGATTTCTGAAACTTTTCAGGTGCAGTGTAAAGAGAAAGAAAGCTAC
CTTGAATCAATGACTTCATGTAACTTAAATAGAGATTTGGGCTCTAGCACCTGCATTGACAGAG
ATAAGAAAACTACACATGGCAATAGTTGACCAAATAGAAAACTAGGCTGAAAGCTGTACGTGTA
TCTTTGCAATGGTCTTTGCATCAAGAAACTTCTGAGCAGCAGGCCAAAGCATCTTTTTGAAACC
TGTTCCAGCATTTACAATGTACATTCTGTGCAACGTCTGCAAAATAATATGATGACTTCAAACA
ACTGGGAATGCATGTGAAGAACATATGAGATGTAAAATTGAGAAAGTCAAGTACCTCAGGGTAG
TAACTGTTGTCTATCTTCGACATGGCAGCCACAAGATTTGCAGCTGTTGGTGTAAAGTTCTTAA
TTCCCTGTCATTAACATGACACTTCACAGATAAGAATCTAGAAGCACTAAAGGTGCAAGTTCTG
CTTCAGAGCATAACACAATGCAAAAATATTCCAAAGCTTGGTAAGAACTTAAATAATTACCAAT
CCTTGCACATCCAGTATTGTAGTTGTGGAACAGATTCGACGCTTTGCAGCAATTGAGCATGCAG
GGAATTTCTCCTGGAGAGCTCTCTCAAACTCTTGCACATGGTACTTTAAATATCTATCTATGGT
GGTGATACGCATAAGCTTAGAGGGATGAGCTTTTCCAAGTCTTTCAATGTAGACAGGTCTTCCT
TCCTTATCAACTCCATGATAGCCTTGAGGATAGTATTGCAAAACTTCTTCAAGCTCTTCGAAAT
CAAAATCCTACCATTCACATACATAGTAAAATTATAAGAGTTAGATATTGATTCCATCAACTAA
TCCAGAGAATGATTAGATGCTTGCATCCAAATACCAAGTATGTTGTACACAAGAAATTACTTCT
TTTTTTCATATGGAAACAAGCAGGTTTCAAACTTAAATAAATGACTCCTAACCTCTAGTATGGT
ATCTGTCCCATACTCTTTTCTCCATCTAAGCATTTCTTCCCACAACTGGGTGGTTTTTTCAATG
TTAAGATCCCTAGCTTTCAAAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.231631908
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020