Plant Circular RNA Database

Detail information of Os08g0128300_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os08g0128300_circ_g.2
					
						ID in PlantcircBase
						osa_circ_035725
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr8: 1611334-1613746  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os08g0128300						
					
						Parent gene annotation
						
							Similar to Actin-like protein 3 (Actin-related protein 3). (Os08
t0128300-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os08g0128300_circ_g.1 Os08g0128300_circ_g.3 Os08g0128300_circ_g.4 						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os08t0128300-01:5

General Information
CircRNA Name	Os08g0128300_circ_g.2
ID in PlantcircBase	osa_circ_035725
Alias	NA
Organism	Oryza sativa
Position	chr8: 1611334-1613746 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os08g0128300
Parent gene annotation	Similar to Actin-like protein 3 (Actin-related protein 3). (Os08 t0128300-01)
Parent gene strand	-
Alternative splicing	Os08g0128300_circ_g.1 Os08g0128300_circ_g.3 Os08g0128300_circ_g.4
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os08t0128300-01:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCACATCTCTGACTGGTCCAGAAAAGACTCATTCACAGCTACTACAGTAGGGATGGTGAAACAT
GGCTCAGAGTTACCAGAGAATCCAAGTTTGCTATACctctggtccaagaaaacgctcatatcca
atatcaattgtgtatgggactccagtcttgggcttaatagcagaccagtgtttgatatacttat
caggcttt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTCTGGTCCAAGAAAACGCTCATATCCAATATCAATTGTGTATGGGACTCCAGTCTTGGGCTTA
ATAGCAGACCAGTGTTTGATATACTTATCAGGCTTTTTGTCATGCTTCTTGAACTCCTGAAATT
GTAACGGAAACACATAATAACCTATCTGTTCAAGATAAGTCTAAACTACAGTTCAATCTTGCTG
GTAGAACCAGAATAATAATATCATATGTAGTATATATTAGCCAGCAGATAAATCCATGACAAAA
GTAACATCACAAAAAATTTAATCTCTGCCATCCGAATCATGCTGCAACTTGCCCATGGGCTATT
CTCCAGGCATTAACTAATCCGTGATAATCATAACAAAACAAATTACAATTCACAACAAAGTTGG
CATTTTTTTTGTTTCTTCAAACATAATTGTTTCGCATTTAAAATTCAAAGGATGATACAGCACG
CCATTATCTCCTGCGTATTCTGAAAAAAAAATACAGCACACCATTCCTTTCATGGAATTTGTTG
TGTTGACTCGATAGTCGATATACAGATACTTCAACAGAAACATCACTTTCAACTATTTCATCAA
AGAATGTATTTATGTACACCGTTGGAAAATTACAACAAGGTACCCTAAAAAACATAAGGTATTA
TTGAGTAAGTAGCTCCGAAACCAAGCAGCATAATACCTTGACAATGTCTGAAGAAGTGTAGCAA
TACATTTCTTTCACCCTACGAGCTATATCCAAAGAATCCTCAGGTGCAATAAGTTCACCTCTTT
CCTGCACAACAAAAGATGCCATTAATCACTAAAAACATTATGTGACAGGCCACAACTAATTATA
GAGGCAATAAAGATCTGGGAGCAGCATAACTCAAATTACAGATGAAAACTGAGTAGAACATTGA
GAATAGTATCAATTGTTCTAATTTAGTACTGTAAAAACTACTCGATGCTCCTTTCAATGTATTT
GCACTATATGAATGCTAGATACACACACACATCCTGTTTATGAACAACATGACTTATGAGGAGA
AGATGAAATACCTGTAAAAGCTGCAAAACAAACTGTGTAACGTCACTTCCTGAAAATGGAAAAG
ACTTGATGCTACTCCCAATTACGTAGCCGTTTACAACCGGCACCACATGTGGAGCTCCATCCCC
AATATCAACTACTACACCTGTCATATCAGACTGACAAAATATACTGGTCAAACTTAACAATAAT
AAGTAGCATGGTGTACCAGAAATTTTAAGGGCATGTAATTAAAAGGGAGCATGAATAGACCCAA
CAGATATGAATTATGGGTGTTCAAACTTTTGCAAGGTTGGTACTGGCTTGCTAGGAACTACAGA
TCTTTATCCTCAACCAAACTGGCAACTAAAAGACTAAATTTACACAGTCATATTGTATTAATGT
TGATTTCTCATAGTGCTTCAATCAGTATTATCTGTCTTTCATATTGCTTAAATATATACTTCTC
TTCGCATATAACACAATATGCAGAACATGTTTATTTGCATACCAGTATACAAGGGAATAGCAAA
ACAAAACTGCATACAAGAATAGGAATTCTAGGAACAACACAGGCAACAAATATCTATGGATAAT
ATGGCAGGAACAGACTGGATTTTTTTTTTTGAAATGTGGCTATTTAAATATCTTAAAGAAAGGG
AGCAAAAACAGAGTTTGTCATAGCAGGGCTACATGTCATTAAAACAAGTTTACAATAATTTTGT
AATACAGAAAATTCTTTTCAGTCAAGGAGATGCAGTCCATGTGGAAACAAATGTCTCACTGGAG
CAAATAAAAAGCATGAAAAGCAGATGTTTACAGAACCTACCACAGAAACCGAGTCCTCATCAGA
AATACTTTTCAGAAAGGCATATCCAGCAGAAAGACTGAGGACAGATTGAACAGAAATATATAGT
CCAGGAACATTGAAAGTCTCAAACATAATTTCCCCTGCACATTCACGACTTTCAGGTGTACTGA
CAGGACTATCGGTAAGAAGGAAGTAGTGCTCTTCAGGATTGCACCGTAGATAGTTGAAAATGCA
CTGTTGCCAAAATCTTTCCATTGTATCCCAGTCATCAACCTGCAAAAGGGTAAAAGGGACATAC
TATAGTCGTATAACATAGAAATATAAACAATTGTTGTTATTACAAACAGAAAACACATAAACAT
ACCTGACCATGATTAATTGGGTGTTTTCTAGTGTACAGCCCACTAGATTTAAATAGTGATAGAG
CCTCATCACCAATAAAAAAATCCAGGTCAGCCATGACACCTGCATTGTACTGTGCTATCCAATT
TGCACTACTGCACATCTCTGACTGGTCCAGAAAAGACTCATTCACAGCTACTACAGTAGGGATG
GTGAAACATGGCTCAGAGTTACCAGAGAATCCAAGTTTGCTATAC
						
					

			
		

Sequences
Splice junction sequence	GCACATCTCTGACTGGTCCAGAAAAGACTCATTCACAGCTACTACAGTAGGGATGGTGAAACAT GGCTCAGAGTTACCAGAGAATCCAAGTTTGCTATACctctggtccaagaaaacgctcatatcca atatcaattgtgtatgggactccagtcttgggcttaatagcagaccagtgtttgatatacttat caggcttt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTCTGGTCCAAGAAAACGCTCATATCCAATATCAATTGTGTATGGGACTCCAGTCTTGGGCTTA ATAGCAGACCAGTGTTTGATATACTTATCAGGCTTTTTGTCATGCTTCTTGAACTCCTGAAATT GTAACGGAAACACATAATAACCTATCTGTTCAAGATAAGTCTAAACTACAGTTCAATCTTGCTG GTAGAACCAGAATAATAATATCATATGTAGTATATATTAGCCAGCAGATAAATCCATGACAAAA GTAACATCACAAAAAATTTAATCTCTGCCATCCGAATCATGCTGCAACTTGCCCATGGGCTATT CTCCAGGCATTAACTAATCCGTGATAATCATAACAAAACAAATTACAATTCACAACAAAGTTGG CATTTTTTTTGTTTCTTCAAACATAATTGTTTCGCATTTAAAATTCAAAGGATGATACAGCACG CCATTATCTCCTGCGTATTCTGAAAAAAAAATACAGCACACCATTCCTTTCATGGAATTTGTTG TGTTGACTCGATAGTCGATATACAGATACTTCAACAGAAACATCACTTTCAACTATTTCATCAA AGAATGTATTTATGTACACCGTTGGAAAATTACAACAAGGTACCCTAAAAAACATAAGGTATTA TTGAGTAAGTAGCTCCGAAACCAAGCAGCATAATACCTTGACAATGTCTGAAGAAGTGTAGCAA TACATTTCTTTCACCCTACGAGCTATATCCAAAGAATCCTCAGGTGCAATAAGTTCACCTCTTT CCTGCACAACAAAAGATGCCATTAATCACTAAAAACATTATGTGACAGGCCACAACTAATTATA GAGGCAATAAAGATCTGGGAGCAGCATAACTCAAATTACAGATGAAAACTGAGTAGAACATTGA GAATAGTATCAATTGTTCTAATTTAGTACTGTAAAAACTACTCGATGCTCCTTTCAATGTATTT GCACTATATGAATGCTAGATACACACACACATCCTGTTTATGAACAACATGACTTATGAGGAGA AGATGAAATACCTGTAAAAGCTGCAAAACAAACTGTGTAACGTCACTTCCTGAAAATGGAAAAG ACTTGATGCTACTCCCAATTACGTAGCCGTTTACAACCGGCACCACATGTGGAGCTCCATCCCC AATATCAACTACTACACCTGTCATATCAGACTGACAAAATATACTGGTCAAACTTAACAATAAT AAGTAGCATGGTGTACCAGAAATTTTAAGGGCATGTAATTAAAAGGGAGCATGAATAGACCCAA CAGATATGAATTATGGGTGTTCAAACTTTTGCAAGGTTGGTACTGGCTTGCTAGGAACTACAGA TCTTTATCCTCAACCAAACTGGCAACTAAAAGACTAAATTTACACAGTCATATTGTATTAATGT TGATTTCTCATAGTGCTTCAATCAGTATTATCTGTCTTTCATATTGCTTAAATATATACTTCTC TTCGCATATAACACAATATGCAGAACATGTTTATTTGCATACCAGTATACAAGGGAATAGCAAA ACAAAACTGCATACAAGAATAGGAATTCTAGGAACAACACAGGCAACAAATATCTATGGATAAT ATGGCAGGAACAGACTGGATTTTTTTTTTTGAAATGTGGCTATTTAAATATCTTAAAGAAAGGG AGCAAAAACAGAGTTTGTCATAGCAGGGCTACATGTCATTAAAACAAGTTTACAATAATTTTGT AATACAGAAAATTCTTTTCAGTCAAGGAGATGCAGTCCATGTGGAAACAAATGTCTCACTGGAG CAAATAAAAAGCATGAAAAGCAGATGTTTACAGAACCTACCACAGAAACCGAGTCCTCATCAGA AATACTTTTCAGAAAGGCATATCCAGCAGAAAGACTGAGGACAGATTGAACAGAAATATATAGT CCAGGAACATTGAAAGTCTCAAACATAATTTCCCCTGCACATTCACGACTTTCAGGTGTACTGA CAGGACTATCGGTAAGAAGGAAGTAGTGCTCTTCAGGATTGCACCGTAGATAGTTGAAAATGCA CTGTTGCCAAAATCTTTCCATTGTATCCCAGTCATCAACCTGCAAAAGGGTAAAAGGGACATAC TATAGTCGTATAACATAGAAATATAAACAATTGTTGTTATTACAAACAGAAAACACATAAACAT ACCTGACCATGATTAATTGGGTGTTTTCTAGTGTACAGCCCACTAGATTTAAATAGTGATAGAG CCTCATCACCAATAAAAAAATCCAGGTCAGCCATGACACCTGCATTGTACTGTGCTATCCAATT TGCACTACTGCACATCTCTGACTGGTCCAGAAAAGACTCATTCACAGCTACTACAGTAGGGATG GTGAAACATGGCTCAGAGTTACCAGAGAATCCAAGTTTGCTATAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017828 						
					
						PMCS
						0.130457712

Conservation Information
Conserved circRNAs	osi_circ_017828
PMCS	0.130457712

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							1613607-1612021(+)
1613710-1612031(+)
1612044-1613743(-)
1611442-1612499(-)
						
						Potential amino acid sequence
						
							MTPALYCAIQFALLHISDWSRKDSFTATTVGMVKHGSELPENPSLLYLWSKKTLISNINCVWDS
SLGLNSRPVFDILIRLFVMLLELLDNV*(+)
MAQSYQRIQVCYTSGPRKRSYPISIVYGTPVLGLIADQCLIYLSGFLSCFLNSLTMSEEV*(+)
MYCYTSSDIVKEFKKHDKKPDKYIKHWSAIKPKTGVPYTIDIGYERFLGPEV*(-)
MTKSLISISNTGLLLSPRLESHTQLILDMSVFLDQRYSKLGFSGNSEPCFTIPTVVAVNESFLD
QSEMCSSANWIAQYNAGVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQC
IFNYLRCNPEEHYFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLKSIS
DEDSVSVV*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	1613607-1612021(+) 1613710-1612031(+) 1612044-1613743(-) 1611442-1612499(-)
Potential amino acid sequence	MTPALYCAIQFALLHISDWSRKDSFTATTVGMVKHGSELPENPSLLYLWSKKTLISNINCVWDS SLGLNSRPVFDILIRLFVMLLELLDNV(+) MAQSYQRIQVCYTSGPRKRSYPISIVYGTPVLGLIADQCLIYLSGFLSCFLNSLTMSEEV(+) MYCYTSSDIVKEFKKHDKKPDKYIKHWSAIKPKTGVPYTIDIGYERFLGPEV(-) MTKSLISISNTGLLLSPRLESHTQLILDMSVFLDQRYSKLGFSGNSEPCFTIPTVVAVNESFLD QSEMCSSANWIAQYNAGVMADLDFFIGDEALSLFKSSGLYTRKHPINHGQVDDWDTMERFWQQC IFNYLRCNPEEHYFLLTDSPVSTPESRECAGEIMFETFNVPGLYISVQSVLSLSAGYAFLKSIS DEDSVSVV(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os08g0128300_circ_g.2

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