Detail information of AT3G15290_circ_g.1


General Information
CircRNA Name AT3G15290_circ_g.1
ID in PlantcircBase ath_circ_021894
Alias NA
Organism Arabidpsis thaliana
Position chr3: 5145528-5145971  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method KNIFE, PcircRNA_finder
Parent gene AT3G15290
Parent gene annotation 3-hydroxyacyl-CoA dehydrogenase family protein
Parent gene strand +
Alternative splicing NA
Support reads 10
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G15290.1:2
AT3G15290.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAAATCATTCGCGGTGCAGATACCTCAGA
AGAGACGTTTCTTGCTACAAAAGTTCTGGCTGAAAGgaagttggtgatgatgctatgcatcgtc
tacgattaacatcgaatcttgaagatttgtgttctgctgatatcatcgttgaagccattgtgga
atcagaag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 335
Transcript exons: 5145528-5145749,5145859-5145971
GAAGTTGGTGATGATGCTATGCATCGTCTACGATTAACATCGAATCTTGAAGATTTGTGTTCTG
CTGATATCATCGTTGAAGCCATTGTGGAATCAGAAGACATTAAGAAGAAGCTGTTTAAGGATCT
AGATGGTATAGCTAAGAGTTCTGCGATTTTAGCTTCTAACACAAGTTCTATATCCATTACTCGT
CTTGCATCTGCTACGAGAAGACCCAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAA
TAATGAAACTGGTTGAAATCATTCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAA
AGTTCTGGCTGAAAG

Genomic sequence GAAGTTGGTGATGATGCTATGCATCGTCTACGATTAACATCGAATCTTGAAGATTTGTGTTCTG
CTGATATCATCGTTGAAGCCATTGTGGAATCAGAAGACATTAAGAAGAAGCTGTTTAAGGATCT
AGATGGTATAGCTAAGAGTTCTGCGATTTTAGCTTCTAACACAAGTTCTATATCCATTACTCGT
CTTGCATCTGCTACGAGAAGACCCAGCCAGGTTTAAGACTCTTTTACTTCCTCTGCTTGAGTTG
ATTATTTATCTGTTCATGAGTTTTCAGGTGCGATCATTTCGAACCTTATATTAAGTGTTTGTTT
ATCGTCTATAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAAAT
CATTCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.340015711
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017