Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0479600_circ_g.1 |
ID in PlantcircBase | osa_circ_007155 |
Alias | Os_ciR499 |
Organism | Oryza sativa |
Position | chr10: 18007805-18009108 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ |
Parent gene | Os10g0479600 |
Parent gene annotation |
Protein Transporter, Pam16 family protein. (Os10t0479600-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 75/7 |
Tissues | root/shoot, root, seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0479600-01:2 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008523 |
PMCS | 0.38578718 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
18007836-18009105(+) 18009005-18009087(-) 18009022-18007807(-) |
Potential amino acid sequence |
MGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQILGVSEQSTWEEIAQA GKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQILGVSEQ STWEEIAQAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEA RQILGVSEQSTWEEIAQAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRA SKTMTEQEARQILGVSEQSTWEEIAQ(+) MGHTSFICIIKCFPVCLEHSSSYNPRAHDNQVCNKLPCLCNLFPS*(-) MLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACAISSQVDCSDTPSICLASC SVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACAISSQVDCSD TPSICLASCSVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACA ISSQVDCSDTPSICLASCSVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIK FAISFP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |