Detail information of Os10g0479600_circ_g.1


General Information
CircRNA Name Os10g0479600_circ_g.1
ID in PlantcircBase osa_circ_007155
Alias Os_ciR499
Organism Oryza sativa
Position chr10: 18007805-18009108  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene Os10g0479600
Parent gene annotation Protein Transporter, Pam16 family protein. (Os10t0479600-01)
Parent gene strand +
Alternative splicing NA
Support reads 75/7
Tissues root/shoot, root, seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0479600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATTAATAACATTCGTAGAGCCAGCAAAACAATGACTGAGCAAGAAGCTAGGCAGATACTCGGT
GTATCTGAGCAGTCAACTTGGGAAGAGATTGCACAGgcagggaagcttattgcaaacttgattg
tcatgggctctgggattataggaagagctatgctccaagcataccggaaagcacttgatagtaa
gttttttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 134
Transcript exons: 18007805-18007871,18009042-18009108
GCAGGGAAGCTTATTGCAAACTTGATTGTCATGGGCTCTGGGATTATAGGAAGAGCTATGCTCC
AAGGACTGAGCAAGAAGCTAGGCAGATACTCGGTGTATCTGAGCAGTCAACTTGGGAAGAGATT
GCACAG

Transcript length: 197
Transcript exons: 18007805-18007881,18008989-18009108
GCAGGGAAGCTTATTGCAAACTTGATTGTCATGGGCTCTGGGATTATAGGAAGAGCTATGCTCC
AAGCATACCGGAAACTGGTGTGGCCCATGAAACAATTAATAACATTCGTAGAGCCAGCAAAACA
ATGACTGAGCAAGAAGCTAGGCAGATACTCGGTGTATCTGAGCAGTCAACTTGGGAAGAGATTG
CACAG

Transcript length: 219
Transcript exons: 18007805-18007892,18008978-18009108
GCAGGGAAGCTTATTGCAAACTTGATTGTCATGGGCTCTGGGATTATAGGAAGAGCTATGCTCC
AAGCATACCGGAAAGCACTTGATAATGCAAATAAAACTGGTGTGGCCCATGAAACAATTAATAA
CATTCGTAGAGCCAGCAAAACAATGACTGAGCAAGAAGCTAGGCAGATACTCGGTGTATCTGAG
CAGTCAACTTGGGAAGAGATTGCACAG

Genomic sequence GCAGGGAAGCTTATTGCAAACTTGATTGTCATGGGCTCTGGGATTATAGGAAGAGCTATGCTCC
AAGCATACCGGAAAGCACTTGATAGTAAGTTTTTTCATCCATTGCAGTCTGTATATAGAGGCTA
CCTCTTTGTTCCTTGACTGAGTAGATAGAAACATGAGATGTGGATTGATATCAGCAAACTTTTG
TGAAAAGACCGCTTACGTGGAGCAACAATCGCTCAAAAACTAAAATGGACGGTAATTTTGCATT
TTGTTATATACTGCACCAAGTTCTATAAAATGAACCATAAACGATGTTATCAAATACTTAGTAA
TTAAAATTCCTTATATTGACATTGTCTTGTCAAATAATTATTAATTAAAATTCCTCATATTGTC
ATTGTCCAAGTAAGATATGACCCTGTTTTATAGATGCTTGCATTTGGACTATAACTTTTTTGGT
ATTACTTACACATATAACGCTATCTCCCTCAATATCAATTTGGTTTTATGTTGCCTGTTGCTCA
TGAGATTTGTTGTTTGATTTCTTCTCACATGCGAGACATATTTATGATACATGGATGTCTAGCA
TCTAGGGGCTTAAAACTGTCATAACAAGTTTGAACTTTCATTGTTTACTAATATCATTCTGTGC
TAGCTACTTACAAGTTGGGTCCACTTATGTTTTAACAATTTGGTACCTGCAGTTAAGTCAGTTC
TTCGGTTTTATGATTTTATGAAGAAATGGATATCTTTGTTTTTTTGCCTAACTTATGGTAGATT
TTAAAGAAGTACCATAAAGGCACAAACTCTATTTTACTAGTTTTAATGGTACTTGTTTGCCTGG
ATTTTATTTACCTAATTTGAACATAAATGTCCTCTGCAATACAATGATACAGAACTCACCTCTG
TGTTATCTAAGAACTCTGATTTGCATAATTATGAGATCAGGCCAACTATATATCTGATTAGCTT
GTATCTAAAGTTTTACAACTCTAAAAACATGTTCACAACTAACTTCTGAATATCAGAAAATGGA
AATACGTTAGTACTTATTAATAGCCACCACAAGACAAATATGACCTTTCTTAATATTTTCCTGC
CAAATCTTTGACTGTAGGAGAATTGTTATTATTCTTTTTTGAAAGAAGGATGACTTATGTTAGT
TTTCCTCCTATATTCTGCCAGATGCAAATAAAACTGGTGTGGCCCATGAAACAATTAATAACAT
TCGTAGAGCCAGCAAAACAATGACTGAGCAAGAAGCTAGGCAGATACTCGGTGTATCTGAGCAG
TCAACTTGGGAAGAGATTGCACAG
Conservation Information
Conserved circRNAs osi_circ_008523
PMCS 0.38578718
Functional Information
Coding potential Y
Potential coding position 18007836-18009105(+)
18009005-18009087(-)
18009022-18007807(-)
Potential amino acid sequence MGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQILGVSEQSTWEEIAQA
GKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEARQILGVSEQ
STWEEIAQAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRASKTMTEQEA
RQILGVSEQSTWEEIAQAGKLIANLIVMGSGIIGRAMLQAYRKALDNANKTGVAHETINNIRRA
SKTMTEQEARQILGVSEQSTWEEIAQ(+)
MGHTSFICIIKCFPVCLEHSSSYNPRAHDNQVCNKLPCLCNLFPS*(-)
MLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACAISSQVDCSDTPSICLASC
SVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACAISSQVDCSD
TPSICLASCSVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIKFAISFPACA
ISSQVDCSDTPSICLASCSVIVLLALRMLLIVSWATPVLFALSSAFRYAWSIALPIIPEPMTIK
FAISFP(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017