Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d009324_circ_g.1 |
ID in PlantcircBase | zma_circ_009598 |
Alias | zma_circ_0002972, GRMZM2G173119_C1 |
Organism | Zea mays |
Position | chr8: 55915556-55923332 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ, CIRI2 |
Parent gene | Zm00001d009324 |
Parent gene annotation |
AMSH-like ubiquitin thioesterase 3 |
Parent gene strand | - |
Alternative splicing | Zm00001d009324_circ_g.2 Zm00001d009324_circ_g.3 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d009324_T001:4 Zm00001d009324_T003:4 Zm00001d009324_T002:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.099910845 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
55923142-55918683(+) 55923322-55915558(-) 55918682-55923322(-) |
Potential amino acid sequence |
MLSHKRFSFSEYQQEFHRFPNSLRYLTQRASGNTPLMPLADMRNDYEDQWKIGSRSVLDVYESN QEIKGSLCPELQIFLLHS*(+) MECFLRLAELNTAKNLETCGILAGTLKKRTFYVTTLIIPKQKSTSDSCQATNEEEIFEVQDKGS LLSLGWIHTHPTQTCFLSSIDLHNHYAYQPVALMECFLRLAELNTAKNLETCGILAGTLKKRTF YVTTLIIPKQKSTSDSCQATNEEEIFEVQDKGSLLSLGWIHTHPTQTCFLSSIDLHNHYAYQPV ALMECFLRLAELNTAKNLETCGILAGTLKKRTFYVTTLIIPKQKSTSDSCQATNEEEIFEVQDK GSLLSLGWIHTHPTQTCFLSSIDLHNHYAYQPVALMECFLRLAELNTAKNLETCGILAGTLKKR TFYVTTLIIPKQKSTSDSCQATNEEEIFEVQDKGSLLSLGWIHTHPTQTCFLSSIDLHNHYAYQ (-) MKKKYLKFRTKAPFYLLVGFIHIQHRPASYLPLIFIIITHISQWH*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
---|---|
References | Ma et al., 2021b;Zhang et al., 2019 |