Detail information of Os05g0402700_circ_g.1


General Information
CircRNA Name Os05g0402700_circ_g.1
ID in PlantcircBase osa_circ_042097
Alias NA
Organism Oryza sativa
Position chr5: 19608266-19608421  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0402700
Parent gene annotation Similar to Fructose-bisphosphate aldolase, cytoplasmic isozyme (
EC 4.1.2.13). (Os05t0402700-01)
Parent gene strand +
Alternative splicing Os05g0402700_circ_g.2
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0402700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCACCCCAGGCTCTGACGCCAAGAAGGTGTCTCCCGAGGTCATCGCTGAGTACACCGTCCGCA
CCCTCCAGAGGACCgtggtcctcgctgcgtgctacaaggccctcaacgagcaccatgtcctcct
cgagggtaccctcctcaagcccaacatg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 156
Transcript exons: 19608266-19608421
GTGGTCCTCGCTGCGTGCTACAAGGCCCTCAACGAGCACCATGTCCTCCTCGAGGGTACCCTCC
TCAAGCCCAACATGGTCACCCCAGGCTCTGACGCCAAGAAGGTGTCTCCCGAGGTCATCGCTGA
GTACACCGTCCGCACCCTCCAGAGGACC

Genomic sequence GTGGTCCTCGCTGCGTGCTACAAGGCCCTCAACGAGCACCATGTCCTCCTCGAGGGTACCCTCC
TCAAGCCCAACATGGTCACCCCAGGCTCTGACGCCAAGAAGGTGTCTCCCGAGGTCATCGCTGA
GTACACCGTCCGCACCCTCCAGAGGACC
Conservation Information
Conserved circRNAs NA
PMCS 0.492076656
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study