Detail information of BGIOSGA015672_circ_igg.1


General Information
CircRNA Name BGIOSGA015672_circ_igg.1
ID in PlantcircBase osi_circ_014328
Alias Chr04:1867668_1869436(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 1794962-1796730  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAAAATGTCCCTTGTGGCTTTCTCCACTTCTGAAGGGGTCCTGCAGTACACTATGCTGCCAT
TGAACATTACTGGTTGGTACCTTGCCTTCACATTACcctggttgagaagtgaagatgcagaaca
ttagggagcaatcaaatagattaacaacccacttttcagtttatgcatttgcatctatgctgct
gtaattgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTGAGAAGTGAAGATGCAGAACATTAGGGAGCAATCAAATAGATTAACAACCCACTTTT
CAGTTTATGCATTTGCATCTATGCTGCTGTAATTGTCTCCTTTTCAACCTCAACATTATTGTCT
GGGAGACTCTGCAGTACCTAATCAAGAGTAGAATTGGCTGTCAAGACTGTAGAGATAGAAAAAA
ATAATTTATAAGTAAGTAGTACACTCATATACCTCATACAAGTGCCAAGATATGTAGGCATCTG
TAGCAGCATACTGAAGTTGTTGCTTTGAGAGAACATATGCCTCCCAGTTTCCCATTCTTATGTT
GCTTGGCTTCGGCAACTATAGACGAGAAGATGCAGCGATTAAAGCATCAAAATTTAAATTTCAG
AAAACCCAAATTTTTCAGGCGCTTTTAACACAAAACACTAGGTTTACCCATTCATTTTAAGGAG
CCCTAGGTTTGGGTGTGAAAATGTTTTAGAAGACCACAGGCATACAACCATACCATCCATTTTT
ATTTGTGCATGATACAATAATACACTCAAATACATACACACAATAGCTACGCCTTTCTGCAGGT
GCCAGTTGCCAAAACTCTTTTTTTATTTCTGTATGATATGATAATGTGTCAAAACAAGTTTGAT
AGCCGACATGGTTGTGTTTCTATGTAACTGATTACCGCATCACTAACACCGGGCTTTGCATTGT
TTTATTTAACGTCTTGCTGTGTGAGGGCAGGGATGGAGAACATGTATTGGACTAGTGGTGAGCC
ACTAATAGATATAAACTAATCAAAGGTATATCAACTTATCAAGAACCTTCAAAAGAAAAATGCT
TGTATTTGAAATACATTTAAGAGATCCTACCAAATATTAGGTGAACTTGTATCATTTAACTAGT
TGTGCAACCGAACTTGCTGTAATGCATAGACCACAAACATAAATAACTGAACAGAAAGAACACA
TTTTTATTCAATGCTACCAGAACTGGGCAAAGAGAACAATGCTTGATACCATAAATATTACCTC
TCTACATGTGACCATTTCAGTTAATGAAGCAAGACTCCATCTTTTAGGAGGGAAACCTAACTTG
GCATTAGCAAGATTTGACAGATCCATCAATGGCTGTACGTGGACATCATAGTCATTGAACATTT
TCCTTGCGTCATTATCTATACATATTCCAACCTGCACTGACATGGAAACAATGGTTTGCATGAT
GAAAACATGTTAACCCGTGCGTGGGAAAAATGGGGATTTATCTGCAGGGAAAGAGGGAAGCTGT
GTTTACTTTAACGGACGAACTATCCTCCAAAAGAGACTTTAGTACAGGTGGCACTCCGGAGTGA
ATGATGTGCATGACATAACAACGAGTTCTCTCCATGCATAACTGCATTACAGCAACTTTACATG
GTGGATCTCCTGCAAAATCCATACCCCATCAGTTATGTTCCGTCAATATCATTACTTGCAAGAG
TTTGAGGGTTTCTTTTTTTTCAAAAAAGAAGACTTGATTCCAGAAACCCACATTTGCTCAATCT
GAACATGCTGAAAATGCAATTAAAGATTTGGTTAGGATTTAGGAAAAACAGCAAACCTCTTCTC
GGAAAGGGCCTCCACTCGAGATCGAATCCAAGAGAAACCTGGCCAGAGGCCTTCATGGTTTCAA
TTTTGCATAAAATGTCCCTTGTGGCTTTCTCCACTTCTGAAGGGGTCCTGCAGTACACTATGCT
GCCATTGAACATTACTGGTTGGTACCTTGCCTTCACATTAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021