Detail information of AT1G02080_circ_g.9


General Information
CircRNA Name AT1G02080_circ_g.9
ID in PlantcircBase ath_circ_000180
Alias NA
Organism Arabidpsis thaliana
Position chr1: 377881-378036  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G02080
Parent gene annotation Transcription regulator
Parent gene strand +
Alternative splicing AT1G02080_circ_g.10
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G02080.2:1
AT1G02080.3:1
AT1G02080.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGTGTGCCATCTAACGAGGCAAAGCCACTTCTGCCATCGTTATCAACTACTTCCGTTGATGTTT
CTGTCAATCCTAAGttgagtggttctggaattggccaacctgcattacagctttcttctcccct
acagcttcaacagaaaaatgaagtgcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAGTGGTTCTGGAATTGGCCAACCTGCATTACAGCTTTCTTCTCCCCTACAGCTTCAACAGA
AAAATGAAGTGCCAAGTGTGCCATCTAACGAGGCAAAGCCACTTCTGCCATCGTTATCAACTAC
TTCCGTTGATGTTTCTGTCAATCCTAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.21771162
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017