Plant Circular RNA Database

Detail information of BGIOSGA022746_circ_g.2

			
						 General Information
					
						CircRNA Name
						BGIOSGA022746_circ_g.2
					
						ID in PlantcircBase
						osi_circ_006670
					
						Alias
						6:12029297|12034443
					
						Organism
						
							Oryza sativa ssp. indica						
					
						Position
						
							chr6: 12029297-12034443  JBrowse»						
					
						Reference genome
						
							Oryza_indica.ASM465v1.42						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							BGIOSGA022746						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						+
					
						Alternative splicing
						
							BGIOSGA022746_circ_g.3 BGIOSGA022746_circ_g.4 						
					
						Support reads
						NA
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						BGIOSGA022746-TA:9

General Information
CircRNA Name	BGIOSGA022746_circ_g.2
ID in PlantcircBase	osi_circ_006670
Alias	6:12029297\|12034443
Organism	Oryza sativa ssp. indica
Position	chr6: 12029297-12034443 JBrowse»
Reference genome	Oryza_indica.ASM465v1.42
Type	e-circRNA
Identification method	find_circ
Parent gene	BGIOSGA022746
Parent gene annotation	NA
Parent gene strand	+
Alternative splicing	BGIOSGA022746_circ_g.3 BGIOSGA022746_circ_g.4
Support reads	NA
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	BGIOSGA022746-TA:9

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GGAGCTAAGCAGACTGATATCTGAGCGCAAATTTGATGAAGCATTTACAATGGCTCTTCAAAGA
AGTGATGTCTCCATAGTGTCTTGGCTGTGCTCTCAGgtaaagatctgggatgatcgcaaatctg
tgcctctgtctgttctgaaaccacatgatggtcaagctgtttactctgtttctttccttacggc
acctgagc

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	GGAGCTAAGCAGACTGATATCTGAGCGCAAATTTGATGAAGCATTTACAATGGCTCTTCAAAGA AGTGATGTCTCCATAGTGTCTTGGCTGTGCTCTCAGgtaaagatctgggatgatcgcaaatctg tgcctctgtctgttctgaaaccacatgatggtcaagctgtttactctgtttctttccttacggc acctgagc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS

Conservation Information
Conserved circRNAs	NA
PMCS

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							12030719-12034350(-)
12030782-12034440(+)
						
					

						Potential amino acid sequence
						
							MHSINSILFGICKQNKASLWQHCYLVEKCFLKPMFQRTHELQCLSASPCLRVTWQQPTFIISGS
PNFYFSIERACCDEIYMLGMLRCRKERNRVNSLTIMWFQNRQRHRFAIIPDLYLRAQPRHYGDI
TSLKSHCKCFIKFALRYQSA*(-)
MPILSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPP
AEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPS
RGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGS
SQNVEVDAKHVDGRKSEQSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDS
QSRSADGSVSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPS
TSTYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIET
SLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEIS
SVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQ
ALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIA
SASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLI
SERKFDEAFTMALQRSDVSIVSWLCSQVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQH
INLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSSLEHRFEEAFFNQVAVLPQAS
LILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQLDTEQIVQVYCVQT
MAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPPAEVTVVESSKETSLIDSSVVGPTKPAS
NNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDG
ASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGSSQNVEVDAKHVDGRKSEQSVELEAVKE
TQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGAGDENTVSE
APEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPSNVNPPIDNVPQV
GIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDAMWARFQEENAK
HEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQ
KVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFE
QVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQRKLLALVSSG
GSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQ
VKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLP
SDSETWRCTQTLELVSSLEHRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTR
LDYIADFTVAMPILSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDP
AISHVYERPPAEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYL
EEGALRRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVL
SSPETIATGSSQNVEVDAKHVDGRKSEQSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLV
TTDKYSVEDSQSRSADGSVSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLH
PQVSRQLSPSTSTYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAP
IAKEGKRIETSLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVM
LEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQI
QTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTP
LAQTLRETIASASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPL
DPVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVKIWDDRKSVPLSVLKPHDGQAVYSVS
FLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSSLEHRFEEAFF
NQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQLDTE
QIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPPAEVTVVESSKETSLIDS
SVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPSRGPSLGDRDIDPSSLDY
SSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGSSQNVEVDAKHVDGRKSE
QSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPS
GAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPSNV
NPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDAM
WARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVARTTAPIIEKS
LSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDALRSSFESTIIPA
FEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQ
RKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSD
VSIVSWLCSQ(+)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	12030719-12034350(-) 12030782-12034440(+)
Potential amino acid sequence	MHSINSILFGICKQNKASLWQHCYLVEKCFLKPMFQRTHELQCLSASPCLRVTWQQPTFIISGS PNFYFSIERACCDEIYMLGMLRCRKERNRVNSLTIMWFQNRQRHRFAIIPDLYLRAQPRHYGDI TSLKSHCKCFIKFALRYQSA*(-) MPILSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPP AEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPS RGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGS SQNVEVDAKHVDGRKSEQSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDS QSRSADGSVSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPS TSTYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIET SLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEIS SVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQ ALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIA SASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLI SERKFDEAFTMALQRSDVSIVSWLCSQVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQH INLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSSLEHRFEEAFFNQVAVLPQAS LILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQLDTEQIVQVYCVQT MAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPPAEVTVVESSKETSLIDSSVVGPTKPAS NNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDG ASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGSSQNVEVDAKHVDGRKSEQSVELEAVKE TQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGAGDENTVSE APEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPSNVNPPIDNVPQV GIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDAMWARFQEENAK HEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQ KVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFE QVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQRKLLALVSSG GSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQ VKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLP SDSETWRCTQTLELVSSLEHRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTR LDYIADFTVAMPILSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDP AISHVYERPPAEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYL EEGALRRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVL SSPETIATGSSQNVEVDAKHVDGRKSEQSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLV TTDKYSVEDSQSRSADGSVSTLLKHPSGAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLH PQVSRQLSPSTSTYNSADSSHEPPSNVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAP IAKEGKRIETSLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVM LEKSLKKEISSVGPAVARTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQI QTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTP LAQTLRETIASASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPL DPVKELSRLISERKFDEAFTMALQRSDVSIVSWLCSQVKIWDDRKSVPLSVLKPHDGQAVYSVS FLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSSLEHRFEEAFF NQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQLDTE QIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERPPAEVTVVESSKETSLIDS SVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGALRRGPSRGPSLGDRDIDPSSLDY SSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGVLSSPETIATGSSQNVEVDAKHVDGRKSE QSVELEAVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPS GAGDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPSNV NPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIKANIDAM WARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVARTTAPIIEKS LSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQDALRSSFESTIIPA FEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETIASASSINQGLASELLDGQ RKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKELSRLISERKFDEAFTMALQRSD VSIVSWLCSQ(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Huang et al., 2021

circRNA

Detail information of BGIOSGA022746_circ_g.2

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