Detail information of Os12g0579000_circ_g.1


General Information
CircRNA Name Os12g0579000_circ_g.1
ID in PlantcircBase osa_circ_012109
Alias NA
Organism Oryza sativa
Position chr12: 23961923-23965621  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os12g0579000
Parent gene annotation Leo1-like protein family protein. (Os12t0579000-01)
Parent gene strand +
Alternative splicing Os12g0579000_circ_g.2 Os12g0579000_circ_g.3 Os12g0579000_circ_g.4
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0579000-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCAACGCAAAAGAGAAAAGGTTAGCCGCAAGTACACACAGCCCGCCAGGCAAAGAAGGCAG
CTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAGctcgccagttgaggaggagagagatcag
gaagttgtccgtgatgtatttggtgaaagcgatgaagatgaacctgctccatatcgtgatcaac
aagaaatt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGCCAGTTGAGGAGGAGAGAGATCAGGAAGTTGTCCGTGATGTATTTGGTGAAAGCGATGAA
GATGAACCTGCTCCATATCGTGATCAACAAGAAATTGATGAAGATTCCCATGTGAGATTTTTAT
GCTCAAATTACCTACCATTCTAGGTTTAAAGTAGGAATATCTTTCGTCAGGCTTAAAGAAAACC
AGCAAAGATTTTCACGGAAGTTCTAAACAGAGCCATTTTTTTAATACATTCTGCACTGAGCAAG
TACAGTATGCTATCGATGACTTGGTGGCATGTTGTTTAAACTGAATATCAGCACAAGTATTCAT
GTAATTCAATACTTAGATAATTTTGTGTTTCATCTTCTTTTAAATTCAGAGTTACCATTTGATG
CTTAACTATGTAACAAATTTATTAATGCAGGTAGCATCTTTGGCTCTTTGCTAATTGTGTATTT
ATCTAAAAATCTTTCTCCCTATTCATTTCTTGTATGTACCCTGCATGAATATTGATTTGTGCTC
CAGTCAGTATTGATCAACTTTCACACCTATTACCTGTTAACTTTTTCTGGATGCAATAGGTACT
CAAATTTCCCTCCTTTTCTTTTTCAGAGATCACCCATGGAAGATGAAGGTCACTATGAGAAGGA
TTTGCAGCCCGACGATGTAGTGGCTGATGAAGATATGAGATATGAATCAGATGAAAATCGTGAA
CTGAAACCAAAAGAGAAACCAGTTGGTCCACCGCTGAACCTGGTGGTTCCACTTAAGCAGCCAC
CAGCTCAACCCGAGAGAGTGAGTTGACTACCCCTTTTTAACCATCTATCTTTCAGTCTTTGACC
ATACAGCACTGTTATCTTTTCTGCCAAGATGATTATATATTGGCAGACATCAGTTATCTTTGAT
GGATATTTATTGCGTTGCTGCATATGCACCAGATTTTTTATTATTAATTCTTTGTATCTGTTAC
TGTTTAATTGCTGATGTTCTGTGCTTGTGCGTAAATGTTGTTGTGCAGAACTGCACAATTGACT
GGTACAGCACAATGTAAGAAATAAAGAACCTGTGTTGCTATTAACTCTTATGTGACATTGGCAC
TTTGGTAGTTGAAATTTCTTTTTATGCCATGGTATTATTGAAGAGAATTTTGCTGTCTTGTTCT
GTAGGCTTTACTAGGAATGTTATGATCGATGCTTAAATGTTTTTGTGCTTTTGCAGCTATTCAT
ATGGTTATTTGTTACTGACTAATTTCTTAACTTGTAGATGAATGTGATCAAGGTATCAAATATT
ATGGGGATTGACCCAAAGCCTTTTGATCCTAAAACATATGTGGAGGAGGATGTATTTGTTACAG
ATGAATCTGGGACCAAAAAAAGGATACGACTGGAGGACAATATTGTGCGGTGGAGAACCGTTAA
GAATGCTAATGGCACTACATCTGTAAGTGGAATGTTTTTCAAGTAGCATTTTGAAATTCTTTAG
CATTGCAGACTCAGTTATGCTACGTTGCCATCTTCTAAATTCCCCTCCCTGAAGATGCTGTGGG
AAGCTTCTTAACTTTCTTACTATAATCTAGTTTGTAAACTAGCCCTTGGTGATGCTTGCACTGA
GTCTTCTCTCATACTAGTCAACTTGCCCAACTGTTATGTATTTCCCTGCAAAAAAAATGCCATT
ATATATACCATAAGATGCTTGCTCCGTTTCTTCTTCCTCCTTTTTTTCTGTCATTGTCTTTTAA
GTAGTTTGTGACAACAGGTGGTTGGTGCACTATGTGGCTATCCATATGATATATGAGCATTGTT
GCAGTGTGAAAGTAATGCGCGCATTGTAAAATGGAAAGATGGGACCATGCAGCTGCTGATTGGC
AATGAAGTTCTTGATATATCTGTTCATGAAGCACATCATGATCAGTCCCATCTGTTTCTGAGGA
ATGGGAAGGTAAAGTACTTCTTATCTGCAATTCAACAATGTTTGCTACCACCTCTGTTCATTCA
TGCTCTTACTGCATAGGTGTCACTAACCTGATATAATTTTGAATTATAATGCAGGGAGTCCTTC
AATCACAAGGAAGGCTCTTACGGAAAATGAGATTCATGCCATCTTCCTTGTCTTCGAAATCACA
TCGTTTATTAACTGCTCTTGTTGATTCTCAGAATAAGAAAACGGTTAAGATGCAAAAATGGATC
GAATCTAAGGATCCAGAGAGAGTGAAGCAGGAAAAAGAAAGGGTAACGAAAAACTCCATTTCTT
AATACATTGGATGTATATGCAACACTGAATGACATGTGCATGACTTACATTTGCCCCAATGCTG
CTTCTCAAAAACAACATGATTTCTGTTGTGTTATATTCTCACTTTCCATTTTGTTTCTATAGGG
GCCATTGGGCTTGACAAAATATGTACATTTATATTTTTTTTCACCTATTTCTTTAGATTATAGG
AGTTGGATGCATGTAATACTTAATAGAGTAGAGTAATCAGTAAAATAGTCAGAATGCAAACTTC
AAATTAAGTAAATATAATTTCGTATCTGACCATGAGAGATTTGAGCAGACACTGAATTTGCACC
AGATAACTGACAAATAAGTAAATAGGAGCATAACTGGTAAGCTAGTACCATTAAGGAAATGCTA
CTAAAGTTCTAATGTTGCAAACTACAAGAATGGTCTTCTTCATGGAAATATGAGCTTCAAATTT
GGTTATTCTTGGGCGCATAGCTAGTCAGGATCACTATTTAAAATGATTGAGAGGACAGTTGATG
CTTTTAGAGCATGATAATCAGCAAGCAAATTTAGAGCATGGCAATCAGCAAACAAATTGTTTTT
CTTGGAGTACAAACATGTAATAACATTTTTAGCTATATAGTGGGGGTAAATAGATGATTCTCTA
AAAACATTATGTGCAAATCTTGGCATGTTGATTGTAAATCTCTTGAACGGTAAAGTGCAAGATT
TTCACCATATTTATCCTAAAAATAAAGATGTAATCATTATGAAGTCATTTGTATGAGTTACACG
ATCTTGCTGCTTTCTCTGTTTTTTTTTTCCTTTCATGATGAGAGTATGAGTTCTAAGATTAAGA
AATTTATGTTGTCAAACCAACAAATATCAATGTGATATCAGAGGTCCCATTATCCAACAAGACT
GCAATTTGTATTCAGAAAATTCTCTTGTTTGTGTGTTTTCTGTTTATCCTGCATGTTTTTCTCC
AGTGCATAAGCAAGCATTAATTAGCATGTTGTTTATGGATTTTAAACTTAATTTTTGTGGCAGT
TAAACACACATTCTAGATCCCGTGAATTTCAGCTTTGATCTGCGGGTCTAAAAGTTATTGTAAC
ATGATTTGTTCTTAGTGCTACGCTGTATAACATTTATTGTGGCTTGCTCCAGTGAACTTTTCAC
AAAAAATAAATCACATAGGGTGAAGTTTCCTTTTATGAAGGTGCAATAACCAAATAGTTGACAT
ACTGATTTAATAAATGCATTTAATCCTGTTCGTGCTTTGCTGTATTTCCTTTCTGTTCTAAACT
TGTTATATATGCATTTTGAATGAAGTTTGTCCCTTTTCACTATGCAGGCCTTGGGCCAAAATAT
TCGAGCCCATTCAATTCTTCAACGCAAAAGAGAAAAGGTTAGCCGCAAGTACACACAGCCCGCC
AGGCAAAGAAGGCAGCTTTCTCCCGGATTTTTGGAAGATGCATTAGATGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.114484753
Functional Information
Coding potential Y
Potential coding position 23962535-23961931(+)
23965618-23961931(+)
23962039-23965547(-)
23962004-23965527(-)
Potential amino acid sequence MEDEGHYEKDLQPDDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKV
SNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWK
DGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTAL
VDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSP
GFLEDALDELAS*(+)
MSSPVEEERDQEVVRDVFGESDEDEPAPYRDQQEIDEDSHRSPMEDEGHYEKDLQPDDVVADED
MRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDV
FVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAH
HDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPE
RVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSPGFLEDALDELAS*(+)
MGIFINFLLITIWSRFIFIAFTKYITDNFLISLLLNWRAHLMHLPKIREKAAFFAWRAVCTCG*
(-)
MEQVHLHRFHQIHHGQLPDLSPPQLASSSNASSKNPGESCLLCLAGCVYLRLTFSLLR*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017