Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os12g0579000_circ_g.1 |
ID in PlantcircBase | osa_circ_012109 |
Alias | NA |
Organism | Oryza sativa |
Position | chr12: 23961923-23965621 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os12g0579000 |
Parent gene annotation |
Leo1-like protein family protein. (Os12t0579000-01) |
Parent gene strand | + |
Alternative splicing | Os12g0579000_circ_g.2 Os12g0579000_circ_g.3 Os12g0579000_circ_g.4 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os12t0579000-01:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.114484753 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
23962535-23961931(+) 23965618-23961931(+) 23962039-23965547(-) 23962004-23965527(-) |
Potential amino acid sequence |
MEDEGHYEKDLQPDDVVADEDMRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKV SNIMGIDPKPFDPKTYVEEDVFVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWK DGTMQLLIGNEVLDISVHEAHHDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTAL VDSQNKKTVKMQKWIESKDPERVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSP GFLEDALDELAS*(+) MSSPVEEERDQEVVRDVFGESDEDEPAPYRDQQEIDEDSHRSPMEDEGHYEKDLQPDDVVADED MRYESDENRELKPKEKPVGPPLNLVVPLKQPPAQPERMNVIKVSNIMGIDPKPFDPKTYVEEDV FVTDESGTKKRIRLEDNIVRWRTVKNANGTTSCESNARIVKWKDGTMQLLIGNEVLDISVHEAH HDQSHLFLRNGKGVLQSQGRLLRKMRFMPSSLSSKSHRLLTALVDSQNKKTVKMQKWIESKDPE RVKQEKERALGQNIRAHSILQRKREKVSRKYTQPARQRRQLSPGFLEDALDELAS*(+) MGIFINFLLITIWSRFIFIAFTKYITDNFLISLLLNWRAHLMHLPKIREKAAFFAWRAVCTCG* (-) MEQVHLHRFHQIHHGQLPDLSPPQLASSSNASSKNPGESCLLCLAGCVYLRLTFSLLR*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |