Detail information of BGIOSGA031653_circ_igg.1


General Information
CircRNA Name BGIOSGA031653_circ_igg.1
ID in PlantcircBase osi_circ_008550
Alias Chr10:20859375_20860551(ZS97RS2), Chr10:20405456_20406632(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17434965-17436141  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2, CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATAGCAGGCTGAAGGGATGCACCACCTTTGGTTTTGGTATTGCTTTAGTTCGAAGGCTCACAG
AACGCTCCTCAAGCTGTTGCTCAGAAAATCCAGTGCcctcatagtctagtcatcatcctcatca
tcgttattgttgttcgcatggtatatcttttgtgcacggtacatatcagcaacctgggaatttg
aacatagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTCATAGTCTAGTCATCATCCTCATCATCGTTATTGTTGTTCGCATGGTATATCTTTTGTGCA
CGGTACATATCAGCAACCTGGGAATTTGAACATAGTAGTAGTCATGCATGAGAAATCTTAAGAT
CGTGCCATAAAGAAAGAAACAAGCGGGAGAAACTTACTTGCTCAGATGTGGTTGCCTGTTCTGG
ATTTTTATCATCACGAACACGTAACAAGCGAGGAAATCTTAGGGAGATGCCCTGGTTCAATTTG
GCTATTAGTATCAAAATCATGCACTTATGCATATATACTACAGAACGGGATTACGGCGGATAGC
AAAACCAACCTTGTTCGGATCAACTATACCATTGGCAGCACGATGCACAGGACTAATGCTCAAA
TCAGCAGCTTTCACCTCCCAAACCTGAGGATCAACAAAATATAATTGCAAACCTCAACAATCAG
AAAATTAAATCAAAGCTGCCTAGACCCCTTAATTTAAACTTTAGGGTCAAAATATATCCGGGGA
AGTAAGAAGTAAAACAGCAAATTCAATAAAACCATGTAAAACACTACACAAAAATATGCTTAGA
AGTTCTAGAAAATTCCCAAAACAATTCGGTCAATTCCATATGTAGTAAGGTGCTATGGTACACG
TATAGAAAATCTAGAGATCAAACAATAGTTCATTTGGAAGATATGAAATTCAAAAACAGTGGAA
TGTAACATCAACAAAAAAAATGTAGAATATATAGGGGTAAAACATAAAGCATCGGTGTTGAATA
AGTAGAAATTCATATCATAAACTGAGTTCAGATTTGAGAAGAATGGGACAAACCCAGGTCAATC
AAATCAAGAGTTCCAGATCAGCAGTGAGTGATGGCAAAAGCCCCTAACAAGAAGTACGAGTACA
ACTAAGAAACAGTCGGTAGTCAAAAGTTTAAGGTGGGCATTACCTCTGAAGGCTCAAACCACAC
ATCTGGGTCCATTGTGTCAGCAAACCTATAGTATGCCTAAAAAAAATGAAAGCACAACTGTAGA
ACAGAACAACAGGACAAGACAATGAATAAAAGATAAAAAGAGAATAATCATGCAATAGCAGGCT
GAAGGGATGCACCACCTTTGGTTTTGGTATTGCTTTAGTTCGAAGGCTCACAGAACGCTCCTCA
AGCTGTTGCTCAGAAAATCCAGTGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021