Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa3G170010_circ_g.3 |
| ID in PlantcircBase | csa_circ_001624 |
| Alias | Chr3:11289514_11292113 |
| Organism | Cucumis sativus |
| Position | chrChr3: 11289514-11292113 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2 |
| Parent gene | Csa3G170010 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | Csa3G170010_circ_g.2 Csa3G170010_circ_g.4 Csa3G170010_circ_g.5 Csa3G170010_circ_g.6 Csa3G170010_circ_g.7 Csa3G170010_circ_g.8 Csa3G170010_circ_g.9 Csa3G170010_circ_g.10 |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Csa3G170010.1:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.480264494 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
11290044-11292110(+) |
| Potential amino acid sequence |
MSIRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLL GYGKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMS LGEDHCWSWLCDIRNPGVESLIKVHIILGDDDLSVKTKLHSLHIKDELQGHLSTNSQYLARSVL SNEKLSSSPETFDPDGIQTASAITEEDDSFKDALPDFLSLSDVGNYESSGRESTETIFNENDIG KGKGISSDIFYEAEDSEDSNFVAVTFLTRGSDSPDYDGIDTQMSIRMSKMEFYCNRPTLVALIG FGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLLGYGKSRVVFYLNMNVDSVSIYL NMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMSLGEDHCWSWLCDIRNPGVESLI KVHIILGDDDLSVKTKLHSLHIKDELQGHLSTNSQYLARSVLSNEKLSSSPETFDPDGIQTASA ITEEDDSFKDALPDFLSLSDVGNYESSGRESTETIFNENDIGKGKGISSDIFYEAEDSEDSNFV AVTFLTRGSDSPDYDGIDTQMSIRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLE DKLVMDKEKAEEKGRVKGLLGYGKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKV HPSSLSIEGTLGNFRLCDMSLGEDHCWSWLCDIRNPGVESLIKVHIILGDDDLSVKTKLHSLHI KDELQGHLSTNSQYLARSVLSNEKLSSSPETFDPDGIQTASAITEEDDSFKDALPDFLSLSDVG NYESSGRESTETIFNENDIGKGKGISSDIFYEAEDSEDSNFVAVTFLTRGSDSPDYDGIDTQMS IRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLLGY GKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMSLG EDHCWSWLCDIRNPGVESLIK |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to salt stress in root |
| Other Information | |
|---|---|
| References | Zhu et al., 2019 |