Detail information of Csa3G170010_circ_g.3


General Information
CircRNA Name Csa3G170010_circ_g.3
ID in PlantcircBase csa_circ_001624
Alias Chr3:11289514_11292113
Organism Cucumis sativus
Position chrChr3: 11289514-11292113  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa3G170010
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa3G170010_circ_g.2 Csa3G170010_circ_g.4 Csa3G170010_circ_g.5 Csa3G170010_circ_g.6 Csa3G170010_circ_g.7 Csa3G170010_circ_g.8 Csa3G170010_circ_g.9 Csa3G170010_circ_g.10
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa3G170010.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTAGGGAATTTCAGACTTTGCGATATGTCTTTAGGAGAAGATCATTGCTGGAGTTGGCTTTGT
GATATACGAAATCCTGGTGTTGAATCACTTATCAAGgtccatataattcttggtgatgatgatc
tttcagtcaaaacaaaactgcattcgttgcatattaaggatgaacttcaaggccacttatcaac
aaattcac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 894
Transcript exons: 11289514-11289954,11290043-11290363,11291982-11292113
GTCCATATAATTCTTGGTGATGATGATCTTTCAGTCAAAACAAAACTGCATTCGTTGCATATTA
AGGATGAACTTCAAGGCCACTTATCAACAAATTCACAGTATTTAGCACGCTCTGTGCTATCAAA
TGAGAAATTATCTTCTTCTCCTGAAACATTTGATCCTGATGGGATACAAACAGCTAGTGCAATC
ACTGAAGAGGACGATAGTTTTAAGGATGCATTGCCTGATTTTTTGTCTCTATCTGATGTTGGAA
ATTACGAGTCCTCTGGACGTGAATCGACTGAGACCATATTTAATGAAAATGATATAGGAAAAGG
GAAGGGCATATCCAGTGACATATTTTATGAGGCAGAGGACAGCGAAGATTCAAACTTTGTGGCT
GTAACCTTCCTGACGAGGGGCTCAGATTCCCCTGATTACGATGGTATAGACACTCAGATGAGTA
TTCGCATGTCAAAAATGGAATTCTACTGCAACAGACCCACTCTTGTTGCATTAATTGGTTTTGG
TTTGGATATAAGTTCCTCAAATTATGTGGAAGCTAACACAGACTTGCCCAGCTCTTTGGAAGAT
AAGCTTGTTATGGATAAAGAAAAGGCAGAAGAAAAAGGCCGCGTAAAAGGATTGCTAGGATATG
GAAAAAGTCGTGTCGTATTCTACTTAAACATGAATGTTGACAGTGTTTCCATCTATCTAAATAT
GGAGGATGGATCTCAGCTTGCAATGCTCGTGCAGGAGAGCTTTTTGCTTGACCTCAAGGTCCAT
CCAAGCTCTCTTTCAATTGAAGGAACTTTAGGGAATTTCAGACTTTGCGATATGTCTTTAGGAG
AAGATCATTGCTGGAGTTGGCTTTGTGATATACGAAATCCTGGTGTTGAATCACTTATCAAG

Genomic sequence GTCCATATAATTCTTGGTGATGATGATCTTTCAGTCAAAACAAAACTGCATTCGTTGCATATTA
AGGATGAACTTCAAGGCCACTTATCAACAAATTCACAGTATTTAGCACGCTCTGTGCTATCAAA
TGAGAAATTATCTTCTTCTCCTGAAACATTTGATCCTGATGGGATACAAACAGCTAGTGCAATC
ACTGAAGAGGACGATAGTTTTAAGGATGCATTGCCTGATTTTTTGTCTCTATCTGATGTTGGAA
ATTACGAGTCCTCTGGACGTGAATCGACTGAGACCATATTTAATGAAAATGATATAGGAAAAGG
GAAGGGCATATCCAGTGACATATTTTATGAGGCAGAGGACAGCGAAGATTCAAACTTTGTGGCT
GTAACCTTCCTGACGAGGGGCTCAGATTCCCCTGATTACGATGGTATAGACACTCAGGTACTAT
TATGATAGTGGTGATAGTTGATTATTTTTTCCAACATCATGTTTTGTTACGATACTGACTAACA
TATATGAAACATTTCAGATGAGTATTCGCATGTCAAAAATGGAATTCTACTGCAACAGACCCAC
TCTTGTTGCATTAATTGGTTTTGGTTTGGATATAAGTTCCTCAAATTATGTGGAAGCTAACACA
GACTTGCCCAGCTCTTTGGAAGATAAGCTTGTTATGGATAAAGAAAAGGCAGAAGAAAAAGGCC
GCGTAAAAGGATTGCTAGGATATGGAAAAAGTCGTGTCGTATTCTACTTAAACATGAATGTTGA
CAGTGTTTCCATCTATCTAAATATGGAGGATGGATCTCAGCTTGCAATGCTCGTGCAGGAGAGC
TTTTTGCTTGACCTCAAGGTGGGTATAATTTATCGTCTCTTTTTGCTAAAATTGTATTTTTATA
CATAGTGTTATTGAGTTTTAAAGCACCTTTTTTTTACTTGCCATTAGCCTCTCGCTCATTTACA
GAAACTGAAATGCTGTCCAAACTTCTTAATATTAGTCTCTTTTTGCTTTAAAAAAATTAATTTG
TTAATTTTATTATTTTTATGCGTGATTATTTAAAGAAATGAAAAACACTAAACATATCTTAACT
CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCNCCCCCACACACACACACACACACAAAAAGAAA
GAAAAAAAAGAAAGAGAAACAAAACAAAAAGCGAAACTATCTTTTCCCTTTCTCACCCACTCAC
ACCCTTGTCTCTTTTGCTCCCTTACACCTCCCTTTCAAACCCAAATCTAGCCTTGGGTGTGCGA
AATCAAAATCTTCAAATCATTAAGGATGGGGTTTTATTTTTCTTTGGGTGCTAGTTTAGAAAAT
AAGAGGAAGAGCATGAAGAACAAGAGGAAGAGGGGTGGGGGGTGGCTAAATGGATAGGTTGTGT
TGGTTCTTTGTTTATTATTATTTTTTAATATTTTATTTGTGTGTTTCACCTAATAATTTTTGGT
TATTATTTGAACTTCTTGTGAACAAAAACAATTTGTGGTTATATATAATTTTTCCACATGAATG
AAGTTTTAGTTTAAGATCAATAAATTATTACCCAGTTAGCTTTAGAAAATATTAGAACTTTAAT
TTTAAGCATTGAATTCCAGTTAATGAGAGTTTTAAATTTAGGACCAAATGGAAGCTAACCCAAC
CTCAAATATTGAAGTGTAGTATTCTTTATTTTACTCTCTTTTTCGTCTGTCTGTTTACAAGACT
AAACAGTTTTTGTATTATCAAGACATCTGGAGCTGGAGATCCTACTTATCGTGGTTTTTGGCCT
GTATCGTCATACTTTATCTGTTGTCTTTTATTTGATGTTCAATGTGTTTTCATAATTTGTATTA
GTATATGGTGTTTTTTTTGATAAGAGACAAGTATATTCATATAACAAAACAGAACATCCTAAGG
GCAAGGGACAAGAGGGCCCTCCCCGGAAGAAGCTAGGGAACTAAGACATAATGGCCTTCCAATT
GTTGAAAATCATAGAATGTATTAGTATATGGTGTTGGTGCTATGTGGTTGTCAACCTCGTTGAG
ATGTCTATGTGTACCTACTAATTCTTGATTTTTGGTTTTTGGATTTCTTCTCGGTATCTTTGTA
CTTTGAGCAATAGTCTCATTTCATTTATTCAATGAAATGACTTGTTTTCCTTCAAAAAGAAAAG
ACTAGCGAACAGATAAATGACTTGTTTTCCTTCAAAAAGAAAAGAATAGCAAACAGTTCTTGTA
TTATCAGTATGTTATGTATGTTGTCATTTTCAATATACGATGAAAGGATGCTAGTGCTTTGATA
TTTTTTTGTAATGGAAACTAAGATTTTCATTGATATAATTAAAATTCATTATTTACAAAGTACA
ATGTACAATACAAGTAGGATCAGGCACCTGGACATCTTAATTGCGAAAATTTAAATCTCATTCA
CTTTTACCAATCTCTAACTGGGATGCTGCTTTTTAGGTCCATCCAAGCTCTCTTTCAATTGAAG
GAACTTTAGGGAATTTCAGACTTTGCGATATGTCTTTAGGAGAAGATCATTGCTGGAGTTGGCT
TTGTGATATACGAAATCCTGGTGTTGAATCACTTATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.480264494
Functional Information
Coding potential Y
Potential coding position 11290044-11292110(+)
Potential amino acid sequence MSIRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLL
GYGKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMS
LGEDHCWSWLCDIRNPGVESLIKVHIILGDDDLSVKTKLHSLHIKDELQGHLSTNSQYLARSVL
SNEKLSSSPETFDPDGIQTASAITEEDDSFKDALPDFLSLSDVGNYESSGRESTETIFNENDIG
KGKGISSDIFYEAEDSEDSNFVAVTFLTRGSDSPDYDGIDTQMSIRMSKMEFYCNRPTLVALIG
FGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLLGYGKSRVVFYLNMNVDSVSIYL
NMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMSLGEDHCWSWLCDIRNPGVESLI
KVHIILGDDDLSVKTKLHSLHIKDELQGHLSTNSQYLARSVLSNEKLSSSPETFDPDGIQTASA
ITEEDDSFKDALPDFLSLSDVGNYESSGRESTETIFNENDIGKGKGISSDIFYEAEDSEDSNFV
AVTFLTRGSDSPDYDGIDTQMSIRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLE
DKLVMDKEKAEEKGRVKGLLGYGKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKV
HPSSLSIEGTLGNFRLCDMSLGEDHCWSWLCDIRNPGVESLIKVHIILGDDDLSVKTKLHSLHI
KDELQGHLSTNSQYLARSVLSNEKLSSSPETFDPDGIQTASAITEEDDSFKDALPDFLSLSDVG
NYESSGRESTETIFNENDIGKGKGISSDIFYEAEDSEDSNFVAVTFLTRGSDSPDYDGIDTQMS
IRMSKMEFYCNRPTLVALIGFGLDISSSNYVEANTDLPSSLEDKLVMDKEKAEEKGRVKGLLGY
GKSRVVFYLNMNVDSVSIYLNMEDGSQLAMLVQESFLLDLKVHPSSLSIEGTLGNFRLCDMSLG
EDHCWSWLCDIRNPGVESLIK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019