Plant Circular RNA Database

Detail information of AT2G44100_circ_g.4

			
						 General Information
					
						CircRNA Name
						AT2G44100_circ_g.4
					
						ID in PlantcircBase
						ath_circ_018279
					
						Alias
						At_ciR1144
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr2: 18242240-18243809  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						KNIFE, PcircRNA_finder, circRNA_finder, find_circ
					
						Parent gene
						
							AT2G44100						
					
						Parent gene annotation
						
							Guanosine nucleotide diphosphate dissociation inhibitor 1
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT2G44100_circ_g.1 AT2G44100_circ_g.2 AT2G44100_circ_g.3 AT2G44100_circ_g.5 AT2G44100_circ_g.6 AT2G44100_circ_g.7 AT2G44100_circ_g.8 						
					
						Support reads
						5/2
					
						Tissues
						leaf/aerial, whole_plant
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT2G44100.2:8
AT2G44100.1:8

General Information
CircRNA Name	AT2G44100_circ_g.4
ID in PlantcircBase	ath_circ_018279
Alias	At_ciR1144
Organism	Arabidpsis thaliana
Position	chr2: 18242240-18243809 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	KNIFE, PcircRNA_finder, circRNA_finder, find_circ
Parent gene	AT2G44100
Parent gene annotation	Guanosine nucleotide diphosphate dissociation inhibitor 1
Parent gene strand	+
Alternative splicing	AT2G44100_circ_g.1 AT2G44100_circ_g.2 AT2G44100_circ_g.3 AT2G44100_circ_g.5 AT2G44100_circ_g.6 AT2G44100_circ_g.7 AT2G44100_circ_g.8
Support reads	5/2
Tissues	leaf/aerial, whole_plant
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT2G44100.2:8 AT2G44100.1:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AGAGTTTGACGAGGAGGGTAAGGTTTCTGGTGTTACATCTGAGGGAGAGACTGCCAAATGCAAG
AAAGTTGTCTGCGATCCTTCTTACCTAACCAACAAGgtacttcacatggacaggaatgactact
acggtggagagtcaacttctcttaatctcaatcaggtcaatatttttgttaaatatatatgaag
actttttg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GTACTTCACATGGACAGGAATGACTACTACGGTGGAGAGTCAACTTCTCTTAATCTCAATCAGG
TCAATATTTTTGTTAAATATATATGAAGACTTTTTGTGGTAAGTTATAATCAGCGAGAGTTATT
GAATGTTGCTTTGTTTTAAACAGCTGTGGAAGAAGTTCAGGGGAGAAGAGAAGGCTCCTGCTCA
TTTAGGTTCTAGCAGAGACTACAATGTTGACATGATGCCAAAGGTTATCAATATTAGCTACTTT
CCAGCTTATCTAGCTTCCTTGTTACCAATATGAATTACTAACTGTTCTCTGTCAATGTGGCGCA
CCAGTTTATGATGGCTAACGGAAAGCTTGTTCGTGTCCTTATTCATACGGATGTGACCAAGTAC
TTGTCTTTTAAAGCTGTTGATGGAAGCTATGTTTTTGTCCAAGGCAAGGTACATTGATTACTCA
TTTTCATTTTTATCTTGTGCCTCATTCTCTTTTTTTTCCATAGATTTCAAGTCTGTTTGTGCAT
CTTTTTTTCTCCCATGTTTGATCTTGGTCAAAAGCTTTTCACTGATCATTCTAGCTTTGCAGCT
TAAGTAATTTTTTTCTAGTTATATTAACTGTTTATATGCTACAGGTCCAAAAAGTGCCAGCAAC
TCCCATGGAGGCCCTCAAATCTCCTCTTATGGGTATTTTTGAGAAACGTCGAGCTGGAAAGTTT
TTCAGCTATGTTCAAGAATACGACGAGAAGGACCCAAAAACACATGATGGAATGGATTTGAGGA
GAGTTACAACTAAGGATTTGATTGCGTAAGCTGATGTTCTCTTGTCTTTTGCATTATGGTGTTG
TCAATATTTGTTTTAGACTATCTGCTGCTAACTATCAATTTAACACTTTGGCAGGAAATTCGGT
CTTAAAGAAGATACTATTGACTTTATTGGTCATGCAGTGGCACTTCACTGTAATGACAATCATC
TCCATCAACCTGCCTATGATACTGTAATGAGAATGAAGGTGAATTGCTCTCATGGGACTTTAAA
GTGTGGATCCCCTTGTTTTCGAAGTCTTCTTTTTTGCTCTCAGTATTTCATGTTTGACTCTGTT
GCTTTAAATGTTTTATCAGCTCTACGCAGAGTCCCTTGCACGTTTTCAAGGAGGTTCACCATAT
ATCTATCCTCTCTATGGGTTGGGAGAATTGCCTCAGGTTTTTTTCTTCTTTTGTACATTGCTTT
ATTTGGTTGGTGCAACTATTCTGGCGTTTTGGACTATAGTTTCTAAATTCTCTCTTATCTTCCT
TGGCTCAGGCATTTGCACGACTTAGTGCTGTCTATGGTGGGACGTATATGTTGAACAAACCTGA
GTGCAAGGTGCGTCTTTGACTTCCTTATCTTTGTGGCTTTTTTGTTTCGGTCGTTTCTGCAACT
TTTTCTGTCGTTAACTATATGGATGCTAGATCTGATAACCTAATATTGCTTTTATAACAGGTAG
AGTTTGACGAGGAGGGTAAGGTTTCTGGTGTTACATCTGAGGGAGAGACTGCCAAATGCAAGAA
AGTTGTCTGCGATCCTTCTTACCTAACCAACAAG
						
					

			
		

Sequences
Splice junction sequence	AGAGTTTGACGAGGAGGGTAAGGTTTCTGGTGTTACATCTGAGGGAGAGACTGCCAAATGCAAG AAAGTTGTCTGCGATCCTTCTTACCTAACCAACAAGgtacttcacatggacaggaatgactact acggtggagagtcaacttctcttaatctcaatcaggtcaatatttttgttaaatatatatgaag actttttg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GTACTTCACATGGACAGGAATGACTACTACGGTGGAGAGTCAACTTCTCTTAATCTCAATCAGG TCAATATTTTTGTTAAATATATATGAAGACTTTTTGTGGTAAGTTATAATCAGCGAGAGTTATT GAATGTTGCTTTGTTTTAAACAGCTGTGGAAGAAGTTCAGGGGAGAAGAGAAGGCTCCTGCTCA TTTAGGTTCTAGCAGAGACTACAATGTTGACATGATGCCAAAGGTTATCAATATTAGCTACTTT CCAGCTTATCTAGCTTCCTTGTTACCAATATGAATTACTAACTGTTCTCTGTCAATGTGGCGCA CCAGTTTATGATGGCTAACGGAAAGCTTGTTCGTGTCCTTATTCATACGGATGTGACCAAGTAC TTGTCTTTTAAAGCTGTTGATGGAAGCTATGTTTTTGTCCAAGGCAAGGTACATTGATTACTCA TTTTCATTTTTATCTTGTGCCTCATTCTCTTTTTTTTCCATAGATTTCAAGTCTGTTTGTGCAT CTTTTTTTCTCCCATGTTTGATCTTGGTCAAAAGCTTTTCACTGATCATTCTAGCTTTGCAGCT TAAGTAATTTTTTTCTAGTTATATTAACTGTTTATATGCTACAGGTCCAAAAAGTGCCAGCAAC TCCCATGGAGGCCCTCAAATCTCCTCTTATGGGTATTTTTGAGAAACGTCGAGCTGGAAAGTTT TTCAGCTATGTTCAAGAATACGACGAGAAGGACCCAAAAACACATGATGGAATGGATTTGAGGA GAGTTACAACTAAGGATTTGATTGCGTAAGCTGATGTTCTCTTGTCTTTTGCATTATGGTGTTG TCAATATTTGTTTTAGACTATCTGCTGCTAACTATCAATTTAACACTTTGGCAGGAAATTCGGT CTTAAAGAAGATACTATTGACTTTATTGGTCATGCAGTGGCACTTCACTGTAATGACAATCATC TCCATCAACCTGCCTATGATACTGTAATGAGAATGAAGGTGAATTGCTCTCATGGGACTTTAAA GTGTGGATCCCCTTGTTTTCGAAGTCTTCTTTTTTGCTCTCAGTATTTCATGTTTGACTCTGTT GCTTTAAATGTTTTATCAGCTCTACGCAGAGTCCCTTGCACGTTTTCAAGGAGGTTCACCATAT ATCTATCCTCTCTATGGGTTGGGAGAATTGCCTCAGGTTTTTTTCTTCTTTTGTACATTGCTTT ATTTGGTTGGTGCAACTATTCTGGCGTTTTGGACTATAGTTTCTAAATTCTCTCTTATCTTCCT TGGCTCAGGCATTTGCACGACTTAGTGCTGTCTATGGTGGGACGTATATGTTGAACAAACCTGA GTGCAAGGTGCGTCTTTGACTTCCTTATCTTTGTGGCTTTTTTGTTTCGGTCGTTTCTGCAACT TTTTCTGTCGTTAACTATATGGATGCTAGATCTGATAACCTAATATTGCTTTTATAACAGGTAG AGTTTGACGAGGAGGGTAAGGTTTCTGGTGTTACATCTGAGGGAGAGACTGCCAAATGCAAGAA AGTTGTCTGCGATCCTTCTTACCTAACCAACAAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.164406136

Conservation Information
Conserved circRNAs	NA
PMCS	0.164406136

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							18242249-18243806(+)
						
						Potential amino acid sequence
						
							MDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVT
KYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGM
DLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPY
IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYL
TNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANGKLVRVL
IHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDP
KTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARF
QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVV
CDPSYLTNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANG
KLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQE
YDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYA
ESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETA
KCKKVVCDPSYLTNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPK
FMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKF
FSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVM
RMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVT
SEGETAKCKKVVCDPSYLTNK(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	18242249-18243806(+)
Potential amino acid sequence	MDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVT KYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGM DLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPY IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYL TNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANGKLVRVL IHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDP KTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARF QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVV CDPSYLTNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPKFMMANG KLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKFFSYVQE YDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVMRMKLYA ESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETA KCKKVVCDPSYLTNKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEKAPAHLGSSRDYNVDMMPK FMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPATPMEALKSPLMGIFEKRRAGKF FSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDTIDFIGHAVALHCNDNHLHQPAYDTVM RMKLYAESLARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVSGVT SEGETAKCKKVVCDPSYLTNK(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of AT2G44100_circ_g.4

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