Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d013058_circ_g.1 |
ID in PlantcircBase | zma_circ_008352 |
Alias | zma_circ_0002076 |
Organism | Zea mays |
Position | chr5: 3954361-3956113 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d013058 |
Parent gene annotation |
RNA-binding (RRM/RBD/RNP motifs) family protein |
Parent gene strand | - |
Alternative splicing | Zm00001d013058_circ_g.2 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d013058_T001:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.041323845 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3955504-3954363(-) |
Potential amino acid sequence |
MKFSTTEAADAAISAASVAPGLGISLKSRPLNVMKAMDKESAHKKALEKAKTEVEDRRNLYLAK ANSPALEGEILAGIPAAEGVSDADMNKRNWLARRKAEMLQSPKFHVSRTRLIIYNLPKTMTIND VKKLCREAVISRATKQNPVIRKVNILKNEKKGIQKHSRGVAFVDFQEHEHALVALRVLNNNPEP ENIPDNVSDDDTSDDNLVGEASFELDQETSNRPSEDDFETEADISKKVLENLIKSSEKSEPSGI EGSDIGTDTETEDDTSEKEKSDSPVADKLVKSKRVTDAEISNPASKPKKNDTGLDRTIFISNLP FDISNEEVTARFSVFGKVESFFPVLHKLTKRPRGTGFMKFSTTEAADAAISAASVAPGLGISLK SRPLNVMKAMDKESAHKKALEKAKTEVEDRRNLYLAKANSPALEGEILAGIPAAEGVSDADMNK RNWLARRKAEMLQSPKFHVSRTRLIIYNLPKTMTINDVKKLCREAVISRATKQNPVIRKVNILK NEKKGIQKHSRGVAFVDFQEHEHALVALRVLNNNPEPENIPDNVSDDDTSDDNLVGEASFELDQ ETSNRPSEDDFETEADISKKVLENLIKSSEKSEPSGIEGSDIGTDTETEDDTSEKEKSDSPVAD KLVKSKRVTDAEISNPASKPKKNDTGLDRTIFISNLPFDISNEEVTARFSVFGKVESFFPVLHK LTKRPRGTGFMKFSTTEAADAAISAASVAPGLGISLKSRPLNVMKAMDKESAHKKALEKAKTEV EDRRNLYLAKANSPALEGEILAGIPAAEGVSDADMNKRNWLARRKAEMLQSPKFHVSRTRLIIY NLPKTMTINDVKKLCREAVISRATKQNPVIRKVNILKNEKKGIQKHSRGVAFVDFQEHEHALVA LRVLNNNPEPENIPDNVSDDDTSDDNLVGEASFELDQETSNRPSEDDFETEADISKKVLENLIK SSEKSEPSGIEGSDIGTDTETEDDTSEKEKSDSPVADKLVKSKRVTDAEISNPASKPKKNDTGL DRTIFISNLPFDISNEEVTARFSVFGKVESFFPVLHKLTKRPRGTGFMKFSTTEAADAAISAAS VAPGLGISLKSRPLNVMKAMDKESAHKKALEKAKTEVEDRRNLYLAKANSPALEGEILAGIPAA EGVSDADMNKRNWLARRKAEMLQSPKFHVSRTRLIIYNLPKTMTINDVKKLCREAVISRATKQN PVIRKVNILKNEKKGIQKHSRGVAFVDFQEHEHALVALRVLNNNP(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |