Plant Circular RNA Database

Detail information of Zm00001d030340_circ_g.7

			
						 General Information
					
						CircRNA Name
						Zm00001d030340_circ_g.7
					
						ID in PlantcircBase
						zma_circ_006624
					
						Alias
						Zm01circ00101, ZmciR12
					
						Organism
						
							Zea mays						
					
						Position
						
							chr1: 123430788-123433365  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRI2
					
						Parent gene
						
							Zm00001d030340						
					
						Parent gene annotation
						
							protein_coding
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d030340_circ_g.6 						
					
						Support reads
						NA
					
						Tissues
						leaf, endosperm
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d030340_T048:5
Zm00001d030340_T002:5
Zm00001d030340_T033:5
Zm00001d030340_T054:1
Zm00001d030340_T010:5
Zm00001d030340_T053:5
Zm00001d030340_T030:5
Zm00001d030340_T051:3
Zm00001d030340_T043:5
Zm00001d030340_T059:5
Zm00001d030340_T021:5
Zm00001d030340_T050:5
Zm00001d030340_T049:5
Zm00001d030340_T028:5
Zm00001d030340_T007:5
Zm00001d030340_T034:5
Zm00001d030340_T040:5
Zm00001d030340_T039:5
Zm00001d030340_T060:5
Zm00001d030340_T041:5
Zm00001d030340_T001:5
Zm00001d030340_T009:5
Zm00001d030340_T015:5
Zm00001d030340_T026:5
Zm00001d030340_T023:5
Zm00001d030340_T037:4
Zm00001d030340_T013:5
Zm00001d030340_T006:5
Zm00001d030340_T005:5

General Information
CircRNA Name	Zm00001d030340_circ_g.7
ID in PlantcircBase	zma_circ_006624
Alias	Zm01circ00101, ZmciR12
Organism	Zea mays
Position	chr1: 123430788-123433365 JBrowse»
Reference genome	AGPv4.38
Type	u-circRNA
Identification method	CIRI2
Parent gene	Zm00001d030340
Parent gene annotation	protein_coding
Parent gene strand	-
Alternative splicing	Zm00001d030340_circ_g.6
Support reads	NA
Tissues	leaf, endosperm
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d030340_T048:5 Zm00001d030340_T002:5 Zm00001d030340_T033:5 Zm00001d030340_T054:1 Zm00001d030340_T010:5 Zm00001d030340_T053:5 Zm00001d030340_T030:5 Zm00001d030340_T051:3 Zm00001d030340_T043:5 Zm00001d030340_T059:5 Zm00001d030340_T021:5 Zm00001d030340_T050:5 Zm00001d030340_T049:5 Zm00001d030340_T028:5 Zm00001d030340_T007:5 Zm00001d030340_T034:5 Zm00001d030340_T040:5 Zm00001d030340_T039:5 Zm00001d030340_T060:5 Zm00001d030340_T041:5 Zm00001d030340_T001:5 Zm00001d030340_T009:5 Zm00001d030340_T015:5 Zm00001d030340_T026:5 Zm00001d030340_T023:5 Zm00001d030340_T037:4 Zm00001d030340_T013:5 Zm00001d030340_T006:5 Zm00001d030340_T005:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							AAAGAATCTTCAATGATAGATATCAGTTTTCTGTCTATCTCTTCACTAATCAATAATGAAGCCT
CATCTCGAATGGGATCAGTTGAATCAGACACGTCACatctgactccctgaagatgcttgaacaa
agaactcctagtaaataattgaatggcgcaaactcaaaggcccgtcgggcataggatgtatgat
caatttcc

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ATCTGACTCCCTGAAGATGCTTGAACAAAGAACTCCTAGTAAATAATTGAATGGCGCAAACTCA
AAGGCCCGTCGGGCATAGGATGTATGATCAATTTCCTGGGACCATTAAGGGTAATAAGAGGTAT
CGTACTTGTCTAATAACATCATAAAAGTGTAGTGCAGAATATCATCATTACCAAGTTGGTGTTA
CTTTCTGGAAGAGACAGAACTAGGCAAAGGAAAACTGCCCAAGCCAGTATAAGTGGTCCTGATT
CTACCAATGAAAATTCAGGCAATTTTGATATTTCAACATCCATCTCCAGAATATCACCGACAGA
AAATGCAGAACACCCTCCACTGGGACAAAAACAAAATATCAGATTAAAATGAAAGGCTATGGAT
ATGTCATGTACTCCAGTGCAGAAACATGCCACTGGATTAAATCAGAAAGTAGATGAGACCTCAG
AGGAACTTCATCATGAATCATCCGGAGGAGATTCTCAAAGTCCAAAGTTTCAATAAGGATGAGA
AGTAGCTGAGCTTTAGCATAATGAAATGAATTCTTTGCCTCAACAGATGCAACAAATTTCCCGA
CACCATAAGAACCACATAGAATGTCCTAAAAGAACAACACTCGCAAAATCATTTTTTATATCAA
GTGAAAAGAAGTAGAAATTTAATTTCAAGTCCAAGAAAAAAACACTAACCTTAAAAATTGAACA
CAAAGTTATCCACTGTCTACCATTACATCTTGAGAAGTTATCATAAAAAGTAAGAAACAATATG
TCAAGAATCAAGTTAACTTCAATCAAAGTTTCTTCCAGACTAGAAATTGTAAATTCCGCTTCCT
GCAAAATAATGTCACACCATGTAAGTTCTAACACCAGAGAAATTTGCCAGAAAATATAAGAAGG
ATGCCAAGGGGGAAAATGCAATTGCTTGTAGTACATCATGCCCTTGCAGGAAGGTTTGATGCTT
ATAAAGTTTAACAAGGACATTATGGCCTTATGACCACAAAACAGCCTTCAAAACTGGAAGGTGC
ACTGCAAATCTACAAGCAAAATGTGAATTAGAATAGATAGGTCCACCACATAAGTTCAAATGCT
TAGCTGAGTGCAAAACCATGCAAAAATATGTCAGTACGCCCTTGCTAAGTTAATATAACTGTTA
ATTTCTATTTCTAATAGAGGCATGCAGCTCTCCTGCGTGTTTAATAAAATATAAATGCTAGTTG
GGAAAAAAGTCAATCTAAGTGGATAGATATATTGCAATGGCACAAAGGGCAAACACAGAATAGA
AACGATACCAAAACCACCCATCATTGCAGCACCTCAAGTACCCCTAATAACACCAACATATAAG
AGACACTTGAAGTTGAATCCTTCTTAGCTCCTCAAAAAGTCACCAGAGTGTACAGGGACTGAAC
AGCCCCAAATTCTAGATGCCAACTTTTCAAACATTTTCTAGCCCAATCTAGCCAGATTGACGTT
AGGTAATGTTAGGCTTAAACCAGGCACCCATGGTTTTCAAGGCATCGCCGAGGTGTCCAGGCGA
TAAAAATCCTATGCATCCTCGTCGCCACGAACAAAATCCAGCAAAACAACAGAGGAGGGGAGGG
AGAACAAAGAGGAAGAACTAGAAGTGGACTAGCAGAATTCAGTGAAAGCCAAGCTCCTATCTCT
GTCCCCATCCCCATCGGCTCCCATGGCCATGGCAGCTCTACTCACCAGCCAACTGCAGCATCAG
GGAGAGGGGCAACAACAGCCCAGCAGCTTTTGATCTGCATAGAGTGGAGAGGGAGCTGGAAGGG
AACGTTTTGCCAGCCTGGGAGGAAGGTGAAGGGAGAGGAAGAGGCAGGGAGGACAGAAGGAGAG
GCGCCACAGCAGCAGCAACAGATGTGAGCATGAGGGGGGAGAGAGAGATAGAGGCGCCACTGTA
TAAATATATTTAACTAGAATCATATTTGAAAATGAGCACTGTAATTGTACCATAGCTATAATCC
ATTAGAAAACAATGGTCAAAATCAAACCTTCAACATCTAGTCAACACAAAATGTGTCCTCTATC
CTTGAACGGACAACTACATTCAAACAAATCCAGGAAGAATCAAGAGCAAAGCAACAATCAATAC
AAAATCACTTGCTCCAAGCCACAAATAAGTGGCATTTCACTTTCAGAAATCAGCACTGTCTCCA
GAACAAAACTTCGACTACAATTCTTGTTGTAATATATCAAAAATATATACCAAAAGTATAATCC
TGTGAAATTATTTGAACACAAATCTAATTGTATAATTTTCAACATATGTTAGCTATCAGTATTG
CCAGTAAATAGATTTGAGAGTACAGAATGCTAAGCATGGTAAATAAGGAGTAACTAGGAACTTG
AGGCTTATAAGGTGCAAAAGAAAAATGCATGCAATGTTACTTGCTGAGTTGCTGCACCAAATTA
GTACTAGTTTCATAAACCAACCGCTTTTACAGAAGATGCAGTTGAAAAAGAATCTTCAATGATA
GATATCAGTTTTCTGTCTATCTCTTCACTAATCAATAATGAAGCCTCATCTCGAATGGGATCAG
TTGAATCAGACACGTCAC
						
					

			
		

Sequences
Splice junction sequence	AAAGAATCTTCAATGATAGATATCAGTTTTCTGTCTATCTCTTCACTAATCAATAATGAAGCCT CATCTCGAATGGGATCAGTTGAATCAGACACGTCACatctgactccctgaagatgcttgaacaa agaactcctagtaaataattgaatggcgcaaactcaaaggcccgtcgggcataggatgtatgat caatttcc
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ATCTGACTCCCTGAAGATGCTTGAACAAAGAACTCCTAGTAAATAATTGAATGGCGCAAACTCA AAGGCCCGTCGGGCATAGGATGTATGATCAATTTCCTGGGACCATTAAGGGTAATAAGAGGTAT CGTACTTGTCTAATAACATCATAAAAGTGTAGTGCAGAATATCATCATTACCAAGTTGGTGTTA CTTTCTGGAAGAGACAGAACTAGGCAAAGGAAAACTGCCCAAGCCAGTATAAGTGGTCCTGATT CTACCAATGAAAATTCAGGCAATTTTGATATTTCAACATCCATCTCCAGAATATCACCGACAGA AAATGCAGAACACCCTCCACTGGGACAAAAACAAAATATCAGATTAAAATGAAAGGCTATGGAT ATGTCATGTACTCCAGTGCAGAAACATGCCACTGGATTAAATCAGAAAGTAGATGAGACCTCAG AGGAACTTCATCATGAATCATCCGGAGGAGATTCTCAAAGTCCAAAGTTTCAATAAGGATGAGA AGTAGCTGAGCTTTAGCATAATGAAATGAATTCTTTGCCTCAACAGATGCAACAAATTTCCCGA CACCATAAGAACCACATAGAATGTCCTAAAAGAACAACACTCGCAAAATCATTTTTTATATCAA GTGAAAAGAAGTAGAAATTTAATTTCAAGTCCAAGAAAAAAACACTAACCTTAAAAATTGAACA CAAAGTTATCCACTGTCTACCATTACATCTTGAGAAGTTATCATAAAAAGTAAGAAACAATATG TCAAGAATCAAGTTAACTTCAATCAAAGTTTCTTCCAGACTAGAAATTGTAAATTCCGCTTCCT GCAAAATAATGTCACACCATGTAAGTTCTAACACCAGAGAAATTTGCCAGAAAATATAAGAAGG ATGCCAAGGGGGAAAATGCAATTGCTTGTAGTACATCATGCCCTTGCAGGAAGGTTTGATGCTT ATAAAGTTTAACAAGGACATTATGGCCTTATGACCACAAAACAGCCTTCAAAACTGGAAGGTGC ACTGCAAATCTACAAGCAAAATGTGAATTAGAATAGATAGGTCCACCACATAAGTTCAAATGCT TAGCTGAGTGCAAAACCATGCAAAAATATGTCAGTACGCCCTTGCTAAGTTAATATAACTGTTA ATTTCTATTTCTAATAGAGGCATGCAGCTCTCCTGCGTGTTTAATAAAATATAAATGCTAGTTG GGAAAAAAGTCAATCTAAGTGGATAGATATATTGCAATGGCACAAAGGGCAAACACAGAATAGA AACGATACCAAAACCACCCATCATTGCAGCACCTCAAGTACCCCTAATAACACCAACATATAAG AGACACTTGAAGTTGAATCCTTCTTAGCTCCTCAAAAAGTCACCAGAGTGTACAGGGACTGAAC AGCCCCAAATTCTAGATGCCAACTTTTCAAACATTTTCTAGCCCAATCTAGCCAGATTGACGTT AGGTAATGTTAGGCTTAAACCAGGCACCCATGGTTTTCAAGGCATCGCCGAGGTGTCCAGGCGA TAAAAATCCTATGCATCCTCGTCGCCACGAACAAAATCCAGCAAAACAACAGAGGAGGGGAGGG AGAACAAAGAGGAAGAACTAGAAGTGGACTAGCAGAATTCAGTGAAAGCCAAGCTCCTATCTCT GTCCCCATCCCCATCGGCTCCCATGGCCATGGCAGCTCTACTCACCAGCCAACTGCAGCATCAG GGAGAGGGGCAACAACAGCCCAGCAGCTTTTGATCTGCATAGAGTGGAGAGGGAGCTGGAAGGG AACGTTTTGCCAGCCTGGGAGGAAGGTGAAGGGAGAGGAAGAGGCAGGGAGGACAGAAGGAGAG GCGCCACAGCAGCAGCAACAGATGTGAGCATGAGGGGGGAGAGAGAGATAGAGGCGCCACTGTA TAAATATATTTAACTAGAATCATATTTGAAAATGAGCACTGTAATTGTACCATAGCTATAATCC ATTAGAAAACAATGGTCAAAATCAAACCTTCAACATCTAGTCAACACAAAATGTGTCCTCTATC CTTGAACGGACAACTACATTCAAACAAATCCAGGAAGAATCAAGAGCAAAGCAACAATCAATAC AAAATCACTTGCTCCAAGCCACAAATAAGTGGCATTTCACTTTCAGAAATCAGCACTGTCTCCA GAACAAAACTTCGACTACAATTCTTGTTGTAATATATCAAAAATATATACCAAAAGTATAATCC TGTGAAATTATTTGAACACAAATCTAATTGTATAATTTTCAACATATGTTAGCTATCAGTATTG CCAGTAAATAGATTTGAGAGTACAGAATGCTAAGCATGGTAAATAAGGAGTAACTAGGAACTTG AGGCTTATAAGGTGCAAAAGAAAAATGCATGCAATGTTACTTGCTGAGTTGCTGCACCAAATTA GTACTAGTTTCATAAACCAACCGCTTTTACAGAAGATGCAGTTGAAAAAGAATCTTCAATGATA GATATCAGTTTTCTGTCTATCTCTTCACTAATCAATAATGAAGCCTCATCTCGAATGGGATCAG TTGAATCAGACACGTCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.062508866

Conservation Information
Conserved circRNAs	NA
PMCS	0.062508866

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						responsive to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	responsive to drought stress

			
						 Other Information
					
						References
						Han et al., 2020;Zhang et al., 2019

circRNA

Detail information of Zm00001d030340_circ_g.7

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