Detail information of BGIOSGA004883_circ_igg.3


General Information
CircRNA Name BGIOSGA004883_circ_igg.3
ID in PlantcircBase osi_circ_010980
Alias Chr01:38955649_38960570(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 41290516-41295438  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA004883_circ_igg.1 BGIOSGA004883_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGCGAAGCAAACAACAACCCACTACTGGACAGCAAAAGGCCCAGTCTACTTGCCAATCATTC
GTTGCTCGGCCGGTTCTGTACTTCTGACGATCGCAGgaatatacattcccaatcaccagcaaag
agcgaagttcttggtgttggcatatatttccttatgatagacaggtattccttttcaaggtttc
ctttgtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAATATACATTCCCAATCACCAGCAAAGAGCGAAGTTCTTGGTGTTGGCATATATTTCCTTATG
ATAGACAGGTATTCCTTTTCAAGGTTTCCTTTGTCTTTCTATTTGTTATGGTCACACTTATTGC
ATCTTTTGGTCTGCCGCTTGTATTGAAGTTGTGGCTACTTTCTCAAAATGCTGCATCATTCAAA
TTTTTTTAATGGTATTCTGCATTGTTCTCACATAACCATTTGGCCCTCCGGACTTTTCTTCTGT
ACTTTTTATTCTTGTAGTAACTGCTAAACATTTTGTAACATTATCCCTTTTCCAGCATTGGCTC
ATTCTACTGGATGGATCGTGATTCTCAACCTATCACAGAGAGTAAAGGGTGATTGCGAAAAACA
TTTCATGCAGTATTAGCTTCATATCCTCCTGATTTTGTCATGTGCATATATCACAATAACAATT
AGCATAGATGTTTTAATTAATTATTGTCTCTTCTACACTTGTAAACATGTGAATAAAACAGGTT
TAACTTAATACTTCATCTGCTAAAGGGTAGGATGGTACAATACTACAGTACATAGAAAGTATGC
ATCCTCTTGCTATCTCGCATACATAAATTAAAATAGAAGAGTTACAGCATGTTACACAGTCACA
CACACTCTGAATGCAATGGGTAGTCACTATCACTTAATAATTATCATTCAAAAGAAAATAAATG
CTACTTGCATTTTCAACTAATATTAGATGCATCATTATTGCATATGCAACATTTACACAAAAAA
CATCATGAAATACAGTATGGAATACACATGTACTTGTAATGATAGTGCTCAGTGGCACAGTTCA
AACTACAAAATATTACTACAACTTAGGTGAGAATAACTAGGTATGTTTCAATTGCAGTGTATTG
CTTAGGAAAGAGGATTAAAATGCGTACTTGTGCATGGGAACACTGTACAAAAACATGTTAGACT
TTGTTGGAAACATTTACAAAATTTTCCAACCTGAAAGTATCCAGCATTTTGGATTACAATTACT
TCTGCCAATTCTGTAACTCTATCTCACTAGTATCTCTTTGCTTTTATGCTAACCCTTTCACAAC
TATTCATGCAGGAGAACTCTATCACTGCAGAGTATGACAGAAACAGTTGTCCAAAAATTACGCA
ATTTTTTGCAACTTCAACCTGTTTTGGTGATGGCCACCAAGGCACCCATATATGGCGAAGGATT
CACTGGAAATGATTTCCAAAGGTAATATCACTACCAGCATGGACCCTTTTTACTGTTATCTGAT
GGATGCAAATATTTTACCTCTCAAAAGGATGATTAAGGTGTGATAAGGTGATTCATTCAGGAGG
AAATGGCACAACTAATTGATCACTCTGATTTGTTTTACATATTTTTGCCACCATGCATTTGCTC
TGTTTAAAATCAACATGTTTCCTTTTGTTGCATATGTCAAGTTCTTTTACTCAGGATCATGATC
TTCCCATGTGAAGAAGCTGAAAACCTGAAGGATACTGGCTTTCTTTTTGGGTATTTAGGGGTAC
TTCAAAACAGATGTTAGAGGATTCAACAATGAGATGCATAGGTCAGGAGGAAGAGAAAAACATC
TCATACCGTGAATTCATGCCGTCAGTATGGCAGGTCCGTGATCTTTATTCATTAAAATGTTAAT
TCTGATTTCGTACAAAGTATTACAGAACATGCTAACAGTAAGCTTCAATCGCCATTTGATTTGT
TTGTTGTATGCATATATACATTGCCGTGTGGCCAGTATCTATTTATGAATCATAACCACATAAC
TGTCTAAAGGATTTCTGAATTTGTGTTCTTGCAGTCATTTGTTACACACAGGATAAAGCTACAA
GATTTAGGTTGGTAAATGGTCTTTTTATGTGGTTCATGATTTTGTCCTTTTTTTCATTGCATAT
GTTTTATTTGATTTTTACAGGACAAGAAGCAGAACTTTTCTCTGGTCAGGAAAACAAGGAGCTA
CCTTTACGTACTTCTGAGTGGATGCAGCCTTCCCTCAACACAAAGGATAAGTTTTCTATTACAG
ATGTAAGCTACTTATATTTTTTTTCTTTTTGTAAGCTACTTGTTACCTTTCTTTCTGTTATCAA
TGTACTATTTTTTTTTTACAGTCCCATGCATATTTTGATTTAGACACGTCCTTTTCCATGATCA
GGATGGTGTTATTCTTATCCACTGAAGGTTATCAGGGTTTCCGCTGATGTACATATCCAACTTC
CTGGCTGGATTATTGTAATCTGTGGAAAAACCTGTAAGAGATGCTAATACTCTGATAACACCTA
TGACTCAGAACCCTTAGGTGAGTGCAGAGTGAACCTCCCTGCTTTTACAGAATAAATGATCTTA
AATTTTCTCAAACTAAGAAGCTAATCAAACCAACTAGCAAAGAATTCACACGTCTCTTACATGA
AAGTCATTAAATCTATGATAAATCGAATGACGCAGAGAAAAGAGGCTTTGTGTTTGTACTGCAG
AAAATATATCTAGATAACTGCAGAAAAGAGGCTTGTCCATGGTCTCTGTTAGAGAACTGGCTGT
AGTTTATTGGGTTGTTTTATCTTCAAATATATCTAGCAAATAATCTGACTTAAGTAAAACATTT
CTAAGGTTAATTGAAATTTTAGGAGGCGTCTAAAACAATTGCAGTACTATACATACCGAGGTAT
ATTGTTTCTCACCATGAGCCCCTGATGCACTTTTCTGGATCACAGTACAAGGTGGTCTGTTTTT
TTATGATACTTGAAAAGACTATTCAGATGATAAAATAACTCATGTTTAATTTAATTACTGCAAA
TTTTTCACCATTATACTTGTTTTAATTTGTTAGAATGCAACTGTCATATTATTTTGAAGTTTAC
TGTGTTTTCTCACTTCCCTTGATGCACAGCTTCTGTTAGTCGATCTTACTTTGCTCTAATATAT
TATTTTCCATACTAAAGCCCAAACATAAACTCACAAAATATCATCAATGAAGCAATAGCAGAAA
AATCATGCCATTTATAATACATGAATCTGACAGTGAAGCAAAATGATCAGGTCACCGTTTGTCT
TGGCTTTTGATGTTTGGCACAGCATAGTTGGACTTGGAACTCTGTATTGATTGCTGGGAAAAAG
CAAGCCAAGCTTCTTTATCTGGACTAATGGCTGCATTATACTAATGTCACGCAAGTTTGACTAT
TTTCTGATTTTTTAAAACACTTCTATTTCTGTGTGGCCATTAGGAAGTGGATGCCTGAAAACAT
TAGATGGGGGAATTAAAAGATATAATGCTTCAGAGTCACCAATTTATCAGGTAATTCCTTCATA
GCCGTGCGGCAGCTGCAGCTCACATTATGCGAGCTTTCTCTGTTAGATATAACTTATGTAGATT
AAGGCTAATCTCAGTGCCAGAAAATGAGGGGTTTAGGTTTGAGGAATATGAGAATATTTATGTA
GATTGGACATAAAATACGACCTAGATTTACTTGCTAGTTTATTCAAGGCCAGCTCAAATTCATG
AAGGTTTGGAAATTAGTTCTGATTGTGCTTATGCTCTTTTTTTTTTCCCTGTTACTAGATGGCT
TGTCTTATCTGTCACATTGTCAAGCACTATGAGAACTTTGTCTAACATCACATTTGATGTGAAT
CTTTGTGTGCCTGCTACATATGGATTTGTTCTTATTTTGTGAGTTTCTACTTGAGTTCCTAGCT
GTCATTTTTATTCTTTTTTTTTTGTTCCAGCTAGTGCTTGTCGCTCACTCATAGCAAGATACGC
ACCCTTCTTGGTGATCCCTAAGTATACCCAAACACTTTATTGCGTTATTGTAGTTGGTATAGTC
ATCTTCTTGTCCATGCTAGGTCGCTAGCATTGTGCTTTTTCCACTTCTTTTTATCAATTGTTGT
TCGTCAATCGAGCATAGCAGCTGATGTACTAATTTAACACAAACTATACAATTCCACGGATGAA
GGTGAAATGGAAGATGTTAACGGCAATGGTTACTTTCTGCCGGCCTTGCAATTGACGAGTTGGT
CCTCCAAATATGATTGTAGATGTCGCTTTTGTGTTTTATGTAATCATATGTGCAATTGATCTAC
CTGAGATGATGTTGACTAATGTTAATTTAGATGATAATGGTATATTCTTGCAGACGAGTTCTTT
CCGACGCCCCTGATACATATCTGTTGTCTTGTACAGAGTACAGACTTTCCATGGCGGCATGAGT
GTCTCGTGGTGTCGTGCAGTAGCCCTGAACTCTTTCTGAATCACGAACTGGATAAAGCTTGATT
GAGAGAGTTGGCAAGGTTGCTGTTCACATTAATCTGTGACCCAAGGTGTAAACAAAGCTTTTGG
AATGCACCATGGAGGTCAGGGTTCTCCAAACCCTTTTAATCTCGTGGAATGAAAAGCAATGGAG
GACTCATATTTGCTGTAGCTTTCGACCGTGGAGCTCACAGAATCCTCGTGCAGAACTGGGTGTA
GCACTCACTACACTCCATCCCGTGGGAGCTTTTGGTACGACAAAGTTTGCAGTCATCAAAGTGG
CAGTGTAAAATGGTGGGAGACTTGGGGTGACGACCTTGTAATCTTGCTGGTGAATCTCCCCTTC
TAAAATCCTGTAGCAGATGTCCAAGAATATTCAACCAACTGCTGAAAAGTGAAAACGACCTTGG
ATCCCATATTCTCATTGTATTGGAGAGGTCAGCAAGCTGCTAGTGCTGCAATGTGGAAGCAGGA
CTGGAGGAGCAGAGGCGATGCATTTCACCCAATGCACTACGAGGTCAGACAGCCATCTGCTGCC
ACGTGTACTGCTACGGTCAGCCGTATGCGAAGCAAACAACAACCCACTACTGGACAGCAAAAGG
CCCAGTCTACTTGCCAATCATTCGTTGCTCGGCCGGTTCTGTACTTCTGACGATCGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021