Detail information of Zm00001d050401_circ_g.1


General Information
CircRNA Name Zm00001d050401_circ_g.1
ID in PlantcircBase zma_circ_001710
Alias circ2252
Organism Zea mays
Position chr4: 86096315-86096972  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method CIRCexplor2
Parent gene Zm00001d050401
Parent gene annotation Polypyrimidine tract-binding protein homolog 1
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Zm00001d050401_T001:4
Zm00001d050401_T003:4
Zm00001d050401_T007:4
Zm00001d050401_T005:4
Zm00001d050401_T002:4
Zm00001d050401_T006:4
Zm00001d050401_T004:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGGCCCTGATGGGAAGATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAAC
ATGCAATATGCTGTGACGGTGGATGTTCTGCACACTggcacttatccagtatactgatgcccca
actgctcttgaagctaaaaactcattggatggaagaagcatccccaagtaatgcattttacgat
tttactaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCACTTATCCAGTATACTGATGCCCCAACTGCTCTTGAAGCTAAAAACTCATTGGATGGAAGA
AGCATCCCCAAGTAATGCATTTTACGATTTTACTAATTGCTACTGTGGATTACCAGGTCTCCAA
TATGAAATTACTTATGCAACTTACTCCCTTTCAGATATTTACTTCCAGAACATATCAGTGCCTG
CCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGC
AGGTATTAGAAAGTGGCATAAGCTAAGTCTTGCGGCTTCCAATTGATAATGCTTAAAAGATATT
ATCTTTTTAAGTGCTATGCTATTTATTAACCATTTATCCCTTGTGAATTGTGATACTATTTTGT
TGATTTAACAGGGATTACACCAATCCTTACCTTCCTGTGAACCAAACAGCAATTGAGGGGATTG
TGCAGGTATGCTTCATATGTTCATATCTCATGATGTTTCACCCCCCAACCCACCCCTCCCCCCT
TTTTAATTTTTGTTGCTCTTACTCTAAAGGAAAATTTGCAGCCCACTGTAGGCCCTGATGGGAA
GATAAAGGAGCCTGAGAGCAATGTACTTTTAGCATCAATTGAGAACATGCAATATGCTGTGACG
GTGGATGTTCTGCACACT
Conservation Information
Conserved circRNAs NA
PMCS 0.160284144
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b