Detail information of Os01g0283600_circ_ag.1


General Information
CircRNA Name Os01g0283600_circ_ag.1
ID in PlantcircBase osa_circ_001366
Alias Os_ciR1002
Organism Oryza sativa
Position chr1: 10145615-10150243  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0283600_circ_ag.2
Support reads 33
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCGTCTTATGGTGCTGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGC
TGTTGGAGTGACCTTGAGTTCTGCAAACAAACACAGaattggtactgctacgcgaagacggtgg
ccgagaagacggcgacggaggaggcgtcgaagagaggtgtgcagctgttggtggtggtgcctgc
cgtcaccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATTGGTACTGCTACGCGAAGACGGTGGCCGAGAAGACGGCGACGGAGGAGGCGTCGAAGAGAG
GTGTGCAGCTGTTGGTGGTGGTGCCTGCCGTCACCGTGGGGGAGATGCTGCAGCCGACGCTGAA
CGCCAGCGTCTACAGGGTGGCCACCTACATGAGGGGCACCAAGAGTGCGTACCCGAACGCCGTC
GCCGCGTACGTCGACGTGCGCGACGTCGCCCGCGCGCACGCGCTGGTGTACGAGCACCCCGACG
CGCGTGGCCGCTACCTCTGCATCGGCAGCGTGCTGCACCGGTCCGAGTTTGTTCGCTTGCTTAG
GGAGCTCTTCCCCCAGTACCCTATCACCACCAGGTACGTAACTCTTGATGATCAATGTTTGAAA
AATACCAGACATGCTTATAAGTTAGGATGGATATGGAGTAGATGATCCAAGTGTGCGGGAAAAT
GTGAAAAATAAAATGATGAGAAAATAAAATGGTAAAACATCTGCAAAAAAAAAAAAATCTTATT
ATTGTTAACTGATCCAGGTGTGAGGACAACAGTAAGCCAATGGTGAAACCTTACCAATTCTCTG
TACAAAGGCTGGAGGCTTTAGGCATGCAGTTCACTCCTTTGAAAGAGAGCTTGTACAAGACAGT
GATAAGCTTACAGGACAAGGGTCACCTACCAGCAATCTCACCTCGTTCAGCCCTGTGAATCATG
ATTAGATATAAACGTAAAATTTGAATAAATTGATTGTGTATGCATTGTGAGAAGGAACGGAGAT
GAATCCTAATCATGAGGCAATGATTATCGTTGTGGTTTTTGTAAGGACTTTAATGCTGTGTTCG
TTTTGCTATGAATTAGATGCATTTCTCTTCTCAATTTTCTGAAAACGCAATGAATAAACACCTG
GCAATTTTCACTTCAGTCAAAAGATGCAGCAAGCCAGCAACGGCAGTGAGTGACGGGTGGTGGT
GCCTTAGAGCGGCAGCTATAGAACGACAGGAGTGGGTGGCGGACAATAAGTCTAACTTACCTAG
CCGACAACAGTGAAACCTTTGAGTGCGCTGCCATGGTCCCTCTTGGGGCCATTGTTGAGGCGGC
TCTTTTCCTCCCTGACGGAACCTTCCGACAAAAACCTTGTCTAATGTGGATCTTCTGGAGACCT
TGAAGGATGGCGGCAATGCTTCTTGCATCACGTTCTTCCTAGAGGTGCCATGTAGGAGGCCCCT
CTACTGCCTAATATGCTTTTAGTCAGTTTAGTGCATAGCTCTTAAATACTAGTAGTGAGCGGCA
GGTCTATACGAGGGAGAGGAATCCTTCTTCCCTCTTGTTCTTAATTTCCCTCTACAACCTTCTG
CTTTGGTGACATCGGGGTGCCTCGGGGTACTGAATTTTACACTAAAAAACTTCAGGGTAGTTAG
TATTTGGAAGTATCATATTTTACACGATAAAATATGGTATCTCCAACAGTCTTGGGTTGGATTC
AGCGGGGCCATCAAAATACTAAGTCTTTAGGGAATCATGCCTTAAATACAGAAGGTGTTTCGGA
TAAGGAAGGAGAAGCATAATTCTACTCGAGCACTGCAAGGGCTACTCGAATCGTATCCAAATTT
GTCTCCCTAGTTCTATTTAGACAAAGGGATATCCGAGGTATAAATACAAGACCCCCTAAGAGGA
GATGGGACAAGCCAAGTCAAAATACAAGCCAATATAGATATAGACAAACCCAATATAGGCGTCA
CAAAGGCCGATATGAGGGATCTAGAGCTATCTCCAATCTCACTGGGTTTATATTCGAGGAAGAA
GACTAAGAGCTCTATGCCGCCAAGCCAACATAGACTAGGTTATGTCATCGCAAATATTGTGCTC
GCGAGAGATATTTATATATAAATGCAATACCGGCTTCGGCCAACAAGAGTAAGGCTATTACATG
TCAGTTAAGGGGGTCCGAACCTATAAAAAATACATGTCTCCCGTCTCTTTCACGTCAATCTCGT
GTATACCCTGACACCAGCAATCCCCATACTGCTATACAAATCCGATCTACGGGTATAAACTATC
TACAAACCTCGAGATATCTAAATTTTACACTAGAATTTTAGTACCTTGAGCTACTTAGTATCTA
AAGGTACCAAATTTTATATTAAATATAGTATCTCTTAGTATCTTTTTAAGAATGGTTAAATTAC
CTTTAAGTTGCACATCGAACATATTTGATTTGGCAACATTCTAACAGTTTTTATTTGGAGTAAT
TTTTTTGTTTATAGTGTCAGGACACTGTAGCAAAGGAGGTGGATTTTTATCGCTCTAGTGTATA
TCCCCCATTTTGTGCGTGCCCCCGAAATGTTATCAAATATTTGAAAAAAAATAGCAACATAGAT
CAATATGTAATATATCACTCCATAAACATGCAAAATCAAATTCAAACTACACAAGTATAACAAA
AATAACAAATTTGATTGTAATTAGTGTGTACTATTTGCACTGAAATTTATTATTTTTGTTTATA
CACGTTCATGTTTGTGAAATAACATATCTCATATTCATCTATCATGTCATTTTTTTTTCAAATC
TTTTTATGTTTATTTAAATAACATGCGACAGAGATATTCTTTTAAGGATGAAAATTAAGAGTTT
CCCTGTAGTGAATACGGTAGTGCAACCTTTTTACTTCGGCTTTGTAACTTTGCCAGGGTGATTA
GCTTTACGTTTTAATAATGCTATAGAATAACTTTACATAATTTGTCATTATTTTTGTCGTATAT
CCGTTTTCTTTTTGTTTTATAAAAAAGCAAGTGATTAATCATTCACGTCTTCTGCATGATCATC
GTGCGCCGTCCCAATAATTCGCATGATCGACCCTACACCCTGCCCGCCGATCGGTACCTCGGTA
CCGGCCGTTACGTTTCCAACTTTGCATCATTTCGAGCCCAATTTGAGGACAGAATTTGGTACCG
CGCTCTCCTGTCAAGGACTGTAGTACGTACGTCCTCCTGGTAATCAGTTAGAATTAAAATCACG
TGACTCTCTCTTGCGTGGAAGCAACACACGCCAAACACAGTACTTTTAAGCCTTGCCATTAGCT
AGCCGTCCGTGTCGATCGTCGACTCGTGTCGCAGGAACATAAAATGCTATGTATACATATATAT
CTCGCCCCGGTAGCACCTGATTCACCAGAGATGCGAAGCAGATATCAGCTGTAAGCAAAGCCTA
CTAGTACTAGTTACGGCAGAGCAGAGAACAGGCGGCCGAACCGATCGACGACGATGGTCACCGG
CCGGAGCGAGCAGATGGTGTGCGTGACCGGCGCCGGTGGCTTCATCGGGTCGTGGCTGGTGAAG
GAGCTCCTCCACCGCGGATACTTCGTGAGGGGAGCCATGAGAGAACCTGGTGAGTTCGTCCACG
TACGAGAACCACTCTTGCGAAAGCATCTAGTTTTGGACATCGATACAGTTTTTAATGTAGAAGC
TAAATCAGTGGTGTAGGCAGAAATTTTTTCATGGATAGTCCTCACTAGTATAAATATGATTTTT
GCATGCGGTCAAATCCGATTTTCGAAGGTAGCTGGGCAGCCCACATGAATCCAGATATCTGCGA
AAGTTGGAGTTTTTTTTTCATGTGGGTAGAGAAACTACATACAAAAATCGGATTTTCACATACG
GACAATTCGTCCGACTACGAAAAGGACATATCGAAAAAAAATCATAAATCCTAAAACCCTAACT
CTAGAAGTCGTTCGAAGCCGTCGGTGTAGTGATCTGTGCGGGAGAGGGAGGGGGGAGGCGTCAG
GTCAACGCCGCCAGAGGGATCCTTCTGTAGTAATGGGCCGCTTGTAATCTAAAAAGGGTCTCGT
CCAGAAAAATCATATCTGTAGTAGTGCCTAGTTCACAAGTTTACACCACATACTAAAATTTTTT
GAACATATAATGTAAATCCCATATACAAGTACAAATTTAATAAAAATACGATAGAAATATAGTA
ATAATGTCTTATAACATCAATAAACAGCTAACAACAATGTTTGAGATGAGTAAATATTATGATA
TAACTAGTTCAAATCCAAAACATCTTACACATAAATAGAAAATTAGGAATCCCCTGCTTTATTT
TACGCTTGGACTTCATGCATCTAATATAGAAATTTCAAAAGATATTGATGTGAAAAGTTTTAAT
TTTAAATTGTCTCCCTACAGCGGACATCAAGAATGCTCATTTGCATGTTCTGGATGGAGCTAGA
GAAGGCCTGTCCCTCTACCGAGCTGATGTGCTCGACCGCAACAGCCTTCGTGCTGCGTTCGCCT
TATGCGATGGCGTTTTCCACGTGGCATCGCCAGTCTCAAATGACCCTGTTAGTTCCAAATTTCC
GGCTGTATTATTCTAAACAATTTCGAATCTATATTTTTTCGGCGTATTAAACGTATATATGATG
ACCGAATCGAATTATTAATTTCAAACGTAGGAACTTCTGCCAGCTGCTATCGAGGGAACCAAGA
ATGTCATCAACGCTGCTGCGGACATGGGCGTCAAGCGTGTGGTGTTTACTTCGTCTTATGGTGC
TGTCCATATGAACCCTAACAGAAGATCTGACCAGATTGTTGATGAGAGCTGTTGGAGTGACCTT
GAGTTCTGCAAACAAACACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.397924942
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015