Detail information of Solyc02g069650.1_circ_igg.1


General Information
CircRNA Name Solyc02g069650.1_circ_igg.1
ID in PlantcircBase sly_circ_000649
Alias NA
Organism Solanum lycopersicum
Position chr2: 39483201-39487729  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI; find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc02g069650.1_circ_g.1 Solyc02g069650.1_circ_g.2 Solyc02g069650.1_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCATGTTTTTGAACAAGCACAGCACGCGATTAGAGAAAAACACAGAACCTGATGTTGCTGTAG
TGCGGGAATCTCGGAGGAAGAGTCTGAGGGCCTTACctttacaaggctattgaccaacttcctc
accaaaattttttgccacaaattcatcaagctgtccccaattaggaggattagatttgctatct
gaaggcaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTTACAAGGCTATTGACCAACTTCCTCACCAAAATTTTTTGCCACAAATTCATCAAGCTGTCC
CCAATTAGGAGGATTAGATTTGCTATCTGAAGGCAATGATCTGATACATGCAAGAATATGCTGC
ACATCGCAATACATTCTGTTGCAAAAGAAAATAAGTTCATAGTCATTTTTGATGAAAAGAGAAA
ACAAATTAATACTCATAACAATCAACAGATGAAGAAGTGAACGACAAACACAAGCAATAACAAA
AAAGAACAAAAAGAAACTTGTCAGCCTTCAACTCTAGGATATATTTGTGTTACTAGATGCCATC
GGGTTGTTTGCTTAAAATGACAAGAGTAATGCAAATCGAGGATTATCATATCATGTGTTAAGCA
ATGCTGTTCCATTAAATGTGCGCTTTTAAATAATGAGGCACAAAGTAATCTAACCAGAATTGAT
TTTTTTTTGTGTGTGAGTTTATTGACCAGAAGCAATGGACGCTCTGAAGGAGATACAGAAAACA
ACAAAATAAAGGAAGGACAAAACAGGGCATTTTGCTATGTGACTACGAGTATTCCTTAACACGT
AAGTTTCCAAATTTTCATCTTCTTCTTTTTTTCATGCTTCTTGAGTTTATGATGCCTCTTGTTC
TTCTACTTACGTTTAAATGCTTTCTTCAAATAAAGACTCCCAAAAGATATATCTATATTGTCTT
ATTAATTATTAGTCTATTCTGTAAGCGCACGTACACACGCACACATAGAGTCTCTCTGGCCATT
ATCAGGATTCTAACAGTTTGTTAAGTTGATGTTTCGGTGCTATTTCTTGCCCTCTTGTATCCTA
GATTTTCAAACGGCCTTAGTACATTATGTAGGCATTATAGGAACTTCAAATAGGCATGGTATAA
CATGGATCATATTTTTTATACTAGCATGAAACTATTGTTTTGACAAGAAAAGTAAGCACACAAG
GAGGTTGAAATGATGAATAAATTGGCTCTTGGGAAAAGAAAATAATAATTCATCCGACAACACG
GCATTACATTGATGTATCTGATCAAAAAATCATTTAACACACTAAAATGACTCCATACCTTTTT
TTAGCATGTTCACTGCTGATATCCAAGTGCGAAAACGCTTCTGAAATTTGAGAATGGAAGATAA
TAGCCACTTGCCTGCAAGTATGACATTCTTTTTAAGCAAGAATTGATATATTTAATGTCAATTA
AAGCAATAGATATAGATGCAAAATTACTTCATGCCAGCACTGAATATATAAAAACAAGGAAAAC
CTTATGAAAAGAATGAACATATAATAATGAACAAACAACCACCACACCAAACAATGATAAGTGC
TTCTAATGAAAAAATAGAATATATTTAGAGAGAGAGAGAGTCCTTGAAGGCGAGCCTTGGTGTA
ACTGGTAAACTCGTTGTCATGTGACCTAGAGGTCACGGGTTCGAGCAGTGGAAACAACATATTG
CAGAAATGCAGGGTAAGGTTACGTACAATAGATCCTTGTAGTCCGAAGAGAGAGAGTGTGTGTT
CTTCTCCCTAGAAACAAGAAAAATTCAATGTTCAACCTTACAAGGATGTTTTGACTTCGCCAAT
ACTGACCTAGATGGTGAATGCAGGAAGAAATTAGTACTTAATGAAGTTCTTGGTCGGGAGGGTT
GAGAAGGTCTAACGCTCAAAGCTGATTATATGTTCGTCCATAAGTGTTAAAAATTTATCTCAGA
AAATATTTACAGGATGTCAAGATACCCCGGTGCGGAGGTGTGAGGCTGGCCATGGATGGTTTCA
GCAAAGGTAGAGGTAGACCGAAGAAGTATTGGGGAGAGGCTATTAGACTGAACATAACATAGTT
TCAGCTTACCAAGCACATGAACATAGATAGAAGGCCATGGAGGACAAATTAGGGTAGAGGAGCG
AGGGCTAGTAGGTAGCAATGCATGTTTTGTTATCCGCCCTTACTAGTAGTTGTAGTATTGCTCC
TGTAGCACTTCAGAACATAGTTACTCTGTACTCTAATGATATTGTCTCTGTTAATGATGTTTTA
GATTCCTTATAGTATCAAGACAATAATAATAGGGTCCTTTTGTAAATATGGTTTCAGTCCTATG
TGCTGTTTTGTTCATTACAGAAATACACAGTTACCAGTTCCAAAAAAATAATTAATAACTACAA
CGACAATAACAATAACAATAACATTAATAACAACACCAGCGATAATACTAACAATAACAAGACA
TCAAACAGAGTTGTATCATATGCAGAGATAAAGCTTAAGGTATCAATGTTAAGCAAATATACAT
GTAACAGCTGAAAATTGAAGAAAACAAAGAACAATGCTGCGACAGCTGCCAATAAAAGATTATT
CTGAGTCCCCCCCAAAAGACTAAGGTTCTTTTGCTCTGCCTAGGACAAATTCAGGAAAAAGTTT
AAAAGTTCACCTGAAAATAGCTTGAACATCTAACTCATGCAGGGTTCTAGATAAGACACGTTGA
AGAAGGCCAACTTCCTTCAAATAGATTAAGAAAACAAATCAGTTAGATACAAGTTCCAGTAGTA
GTAACGTTTCACAAAATTTTAGAAGAACATCATAAGAAGCAACATTAGAAAGTAACTTGCATGC
AACAACTATACAGAGGACCAAAGTAAAACTGTAACCTCCAGACTAAGATGAGAAACATCAAGGA
TAGCAATTGAAAACAAGAGCAAACTTGCATAGGTTTTACATTGCATCAAATATCAGAGAAATGT
CATATTTGAAATTAGTTCACTAACTCAGCAGTAGCCAATTGCCTGTAAATTTCAAACAGGGTTT
GAACTTTTAGCTGTTAATATTTCAGGTCAATTATAACTGTCACTTGACAAACCCAAATCTATTA
CAATCAAGAAGGGTTGGTGTAAAACATGGCAGGCTGCACCATTCTGTGTCTATGCCTTTTTCCT
TTTCTTTTTTTTAACAAGGTAAATAATTTTATTGAGAATAGGAAGAACTCCAGTATACAAGTGT
TCCTCATATGGTTTATACATATGGAAGGAAAGAAAAAAGATAGCACTTAAAGAGAGAGCATGAT
TCATAAGAGAAGAATTTGATACGCTATTTTGGTCTTAGAGATATTATTGGTGCACATTGTTTTT
GGTGTAGACAGTCTCACTCGGTAGAAACTGTTGAAATTCTAGATGTATTAAGCTCCCTATAGAT
AACTAGAATAGCTCCAGTTTCTTAAGAATCTTTTGATGTAAATATGGTGCAAGACCAATGTACT
GAATGATCTTAATCATAGTTAGAAATACACAAAGTTACCAATTTCAAAAAAGTGGCTGCAAATT
CACAAGGAAGCAAACATAAGGAAGAGGTGGACCAAAAATGGGGAGCAAGAATTGGGCTTACTAC
AGTATAACTTGTACCTTAGTGATAGAACGAGCAAACTGACTTGGCTGCGTATCAGTATTTTCTG
GCCTATTCCAACTCTCAACAATCTGTGGAAGCCCACGGAGGTGGACCAGCAACCTTTCCCTCAT
TATTTGCACCAACTTCGAGTGTATCTCATCTCGGTGCACTTTATAGTCCTGGATTTCATGCAAA
GCTCTAGAGTTAAAATAATATTTCCCCACCAAAACCTTGGGTGAGTGATAATCTCAGCAGTCAG
CACAGCAAACTTTTTGATTGGGGCCCACGGCATAGCAGTGATTGATTTGTACAGAATTAGCGAA
TATATTCCTCTATGTTTATACAGTAGAAATGGAAACGGACAAAATGCAATTGTCATGTGAGAGA
TAAAGGAAAAAAAAATTCACAAAATAGGAGAAACTGGAAAATACATGGTTGGGGATAAGCAGAA
CCCCGTGGTTATTAGCAGAAGAGTATTACAACATGAATTACTAACAAGCAGGCTACAGCTACAC
CAAGATGGTAGATGCTGAATTGTTTTACACACTCTTTTTTTATCTTCCTTTTAGTTTGACAATA
TATTGAAATATAAGGAAACATCTCAAGCCAAAAAGATACTCCAAGTAGAAAGGTCACATAACTT
CCATTTTATTCCAGTTTTTGCATTTATAAACAATTATAAGTCACTACAGCTAATAAGATGCATT
CATATGATACATACAAAAGGAAGAAACTAATCACAGCCATCTCTCTCCACTTGGCGTACAAGTG
CCTACGTACTGAAGATAGTCCAAGAGATCCTGAGATCCTGTTTTGGCTTCCATTGAATCTTACA
ACAGCTTTAACTCCATATGGTCAATTTATATTTTATTTTTTGAGAATGGTAACATTTCTATCCA
TCAGTACAAACATTGTACTGGCATCTGAAATATCGAAGCATGTGTTTCCTCATTTCCAGATAAT
CAGACCAAGCTTCTGAAGAAGTAATGTTTTCAGTAATATAGTACAATTGGTCTCCAGAGGTGAA
GTAGATCTTGTTTTCCATGTTTTTGAACAAGCACAGCACGCGATTAGAGAAAAACACAGAACCT
GATGTTGCTGTAGTGCGGGAATCTCGGAGGAAGAGTCTGAGGGCCTTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.130333039
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Yang et al., 2020