Detailed infomation of each circRNA
General Information | |
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CircRNA Name | GLYMA_10G006500_circ_g.1 |
ID in PlantcircBase | gma_circ_002523 |
Alias | Gm10circRNA1197, gma-circRNA1476 |
Organism | Glycine max |
Position | chr10: 634410-634879 JBrowse» |
Reference genome | v2.0.38 |
Type | e-circRNA |
Identification method | Tophat, CIRI, find_circ |
Parent gene | GLYMA_10G006500 |
Parent gene annotation |
hypothetical protein |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | NA |
Tissues | root, stem, flower bud |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | KRH31703:1 KRH31702:2 |
Conservation Information | |
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Conserved circRNAs | ath_circ_000627 |
PMCS | 0.120583138 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
634437-634436(+) 634863-634830(-) 634829-634814(-) |
Potential amino acid sequence |
MIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAAFPLLKGVVATTDVVEACTGVNIAVM VGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAAANCKGKLDMLLSL*(+) MLFKGRSLGLVNGDVLSHHILPLHTFFSRESTNHHCNIDPSACLNHIGCSNNTFKKRECSIHQF HFNPIQRLCCWRNVKHVEDHGLVRTQHHSPSNHRDKSISNLPLQLAAACFSRAEAWDL*(-) METFLVITSFLSIPSFLGNPPTITAILTPVHASTTSVVATTPLRRGNAASTNSILTPFNDSAAG GMSSMWRITGWSGPSITPLAIIGTRAYPICPCSWQQHAFQGQKPGTCKWRRS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zhao et al., 2017a; Chen et al., 2018 |