Detail information of BGIOSGA030403_circ_g.2


General Information
CircRNA Name BGIOSGA030403_circ_g.2
ID in PlantcircBase osi_circ_018842
Alias Chr09:5587552_5592303(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 4600482-4605233  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA030403
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA030403_circ_g.1 BGIOSGA030403_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA030403-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGATGCTTGAAGAATCCCTAGGGTCTGTTCAGAAGTCCATCCATGAGGACGTGAGAAATCTG
CACATCGAACTTCTAAGACAGTTTCACATGCAAGAGgatctaattgtagcaagtgctggggatg
ataaaaagatctcattgtggcacaaaaaaggtcaaaatgtaggacagctaccaacatcaactgt
tgatcgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTAATTGTAGCAAGTGCTGGGGATGATAAAAAGATCTCATTGTGGCACAAAAAAGGTCAAA
ATGTAGGACAGCTACCAACATCAACTGTTGATCGTGGGGATGACATAGAGGTAGAAGTGCACTC
TTATAATATTTGTGCTCTTGGCTTTCTCCAGATAGCCATGCATGGTACTCATTCCTATATATTA
TTCTACCAGGAATTCATCTAGCATCGATTCAAAGAGTATATATATTATCTATTGTTAGGGTAGC
ATTTTCAATCATTTTCTGTTGATGCTGTTACACACATTATCGATTTATGATCTTTATTTGTTTT
AGCATTAGAGTTATTGGCAATATGAAAATGTTAAATCTAGACTGGGTTACTGGACTCCAGAATT
TTGTTACTGTTCTAGTACATGATTGGTTTGACGACGCATTACGGGCCTGTTTGGCATAGCTCCA
GCTCCAGCTCCACCTCTCCTGGAGCTAGAGCCCAGCCAAACAGTTCCAGTTCCACCTATATTGG
GAGTGGAGCTAGGTGGAGCACTCTCACAAAATGAACTAGAGAGGTGGAGCTGGGTTTAGCTTGC
TGCCTTGCTCCACAACTCCACTCCAGAGTCCAGACACGACTCCTGAAGTTAAGTTTAGGAGTTG
GAGCTCTACCAAACATGCCCTACATGATTTACTTATATAACGCATCACGTGCAATTTGTTTAAA
ATTATATTCTAGATATGGAAACTACGATGGTTTATTATTTTCTGTATTATTGATTCAGAGTTCA
AAATTATGTTTACATTTTTTATTTCACGATATGTTTCATGTTTATTTTTAATTCCTTCTGTCGA
TTCACTACTAGAGGAACATTGAATCTATTATTTGGTAATTATGACTTGTGAGCCTGTAGCTTAA
CTCAGCAAATTACACATCATTATCAGGAGTGCATATATTCTATCAGTTTTAGCAACAAGGGTTC
ACGATATCTTTGCTCTGGTGGGAGTGGCCACATCGTTAGGATATGGGATTTGCAGCGGAAGAGG
TGCATCAAATGGTTAAGTGGTCACACTGACACCATTACGGGTGTGATGTATAATTGCAAAGATG
AACATTTGGCTTCAATCAGCATGAAGGGGGATCTTATTCTCCATAATCTTGCTTCTGGAGCACG
TGCTGCTGAACTTAGTGACCCAAATGGGCAGGTGAATAACTTTTTACTTTCTGTGTTTCTGTGT
AGTATGGTGATGCTGTCATGCCCTGTTGTGGATTTTAAGTTCTCGAGAATTCTTAAATTTTCCC
CTTCTGATTTAGTTTTCTTGCACTTTTTCTGCAAGGTCAGGTTTTGAGAGTCCTTGACTATTCA
CGTAATAGTAGGCATATATTGGTGACAGCAGGAGATGATGGTTCTGTGCATCTCTGGGATACAA
CTGCAAGAACTCCAAAGGTACCTAAAGTACATTGATGCTGCTTAGTTGAACATCTCCTAGGGTT
CATCTTAAATCAAAGCTATGCCATTTTTATATAATTTGAACAAAAGATAGAATAGAGCCTCGAA
GGTAGCACGTCATATAGGTGATAAAGGAAATCTAAGTTTAATAATTGCCAAAGTTGACTCTTCA
CTATCTGTTACCAATAGTTAGAAGCTTGGAAATATAATTAAATTGATTGGGAAATATTCCCTCA
TTTTGTGAATACTTGTCACTTTTGACCATTTTATTTGTGCACAAATACTTGTCAATTTATGGTT
CCCAATGTGCATTTTCCCTATTTTATCCATATTAACTCCCTTGCTTTCTATTCTCTCCACCACA
TATTTGGTGATTCTTGAATGAAGCATTTAGTTAGTTTTGGAGGGCAATATGACATTTCGTATGA
AAGTTGAAAGCAAACAATTACCTAGATATGTGTGTTATAGTCAAAAGTGACAAGTGAATATATC
TATCTATACAAATGCTGGTTCAGATTATTATTTTATGAAAAATAAAGAAAAATTCCAGACAGTG
ATTTGAATAGTCCTCTCTGTTTATGGAGACTTAGATGTGATTGCTACATTTACATTGCTTTGTG
CTTTCTCTAATGCTATCATCTAACTGATTTTATTCATCATATAGGTCTCATGGCTGAAGCAACA
TTCTGCACCCATAAGTGGTGTCTGTATTTCGCCCTCCAGTGATAAGGTTTTGTACTAGTTAATA
TGGTTGGTTCTTATTGTGTGAATGAATAATATCTTCATATCTTGGTATTAAGGTCTATAATTTA
TTTTGTAGATAATTGCTACAGTTGGCCTGGACAAGAAGTTGTACACACTCGATTCAGGGTCAAG
ACGACCAACACACACTATTCCTCACGAGGCCCCTTTCTCATCATTGGCATACAATGATGATGGT
ACAATATTGGCTGCAGGCACAAATAGTGGTCGTGTGGTATTTTATGATGTTCGAGGAAAACCTC
AGCCATTGACTATTCTTCGTGCATACAATAGCTCAGAGGTGCGAAATTGTACATTTTTCTTTTT
CCTCATTGCTGTCTGCAAATATATTACATGATCTACAAACAGATTTTGTTCTCTATGTGTAAAT
GAATTAATCCATTATTACTATTGATTTTTATATCGGTGGAGCTTGCGCACATGTCTGCTGATAA
CTTGGTTGTTTAAGTATATCACAGAACCCTTGCTTGATTTTGAATGTTGTCAAAAGTTCATCCA
TTTTCCAGTATTACATTACTAGCCCATTTCAGTACTATGTTATGAAACCACATTCGAAGATCAA
ATGTATCACTCATTAGAAAAAGAAGTAATCAAAGATGGAATTTTATTTAAGTGAGGGTGGGGAT
TTTTTTTGTTGTAGTGAAATTTCACATACTTATAATGAGCAATTTAGTTATTATTAGGCCTTCT
ACTTGGTTCACAATTCCATCTTTTACTATATTTCCAGTTTTCCACCCCTTCCTGAAAAATAGAG
AAAACACTCTTCTATTTGCATGTATTTTGCAGACTAAGTTTATATTCTAGAGTATGCATATGCT
CATAGGAATTGTTGACGTTGAGCAAATTGCATTAGGATAATGTCTGCATGAATTATTTGTTGAC
TTTCAGTTTATGCAGACCATTTTTTCTTTTTATCCTGTACTATGGCCATGTTATTAACATGATA
AGTGACAACTAATCTCTTGAAGGACAAACAGTTCAATAAACTGATATGAACCTGATGTAAAATT
TCTTCACAGATATTATTGTATCTGCACTTTCATTGATGAGATTTTGAATCCACAATGTTTAATC
AGGCTGTGACAGGTTTATGTTGGCAAAGGTCAAAGCCTGTCATTGTTAACGAGAATAGTTCTTC
TGAGGTTGCTCTTCTGGGTGGGAGTAGTGAAGAATCTGTTCTCATGCCAGATCCCTTGCCTTCA
GCAACTTCAGCTTTTCATTCTGGAGGTGTCATCCCAAATCTTCGGTCTTCTTTGGCTGCAAACC
CAAGTGGATTTCTTTCTACCTCTACCTCGTCCACTGTGGAGGAAACTCCATACAGGACACGGCC
ATTGTCTGGTGGACCATTATCAAAGCTACAGGCTCCTCGTAGTAACTTCAGTCTAAAGGATGAT
ATGGATGTATTCTCTCCACTTGTAGATGTTCAACCTTTCACACCGTCCAGTGGCAGCCTGTGGG
ATGACCATGGGAGTGATGAAACAAAAAAGGATGATAAACTTGGAGAGAAGAAATTGTCGACAAC
TAGAAAATTCCCGTTTATTGAAGACAATAATGAGCCACATCCAATCTCAGACTGGAAGTCAATT
TCCAATTCAAGACAGGTTACTTGATTTATTCTGGTCCTATATATCACTGTTTGACTTGACATAA
CCCAGTCATGCAAAGATGTAAAGCCTTCTTAATTTTGTTCTTCATATCTCTATTCTACAGGATG
ATGCCTCATCAGCAACCACTACATCCATGCCATCATGGAAGAGTGAACTATCTATCACTTCACC
TGAGACAGCAACTGGAAATGCATTATCCGATAGGTTAACTCACCGCCAACAAGTCTCGCGCTTT
GGGGCTTCAGCCTTTCAGACTGGCAGCTTTGCATTTGCAGGCTTACAAGATTCAGCTCCAACAA
CTGGTAACTCACTGAAAGGTTCTCTAACAAGTAATATTTTAATGAACCTACAAAACAAGGGTGT
CTTGAGCAATGCACGCCCTTCCCTGGACATATCAACTTCTAGCCTCCAGAGTTCACTGTCCTCA
GGCTTAATGGCCAAGACTATGCCACCAGTAAACTCCGACCAGCCTGGAGCAGCACAATCTAGTT
CTCAATGGAGACCCTCAACATATACTGATAGAGTGAGCACATCGTCTGTTTTCAGTGAAGGATT
AGCATCAGCCTTTGGTTCACCAAAATCAAAGAAGACTGGGGCAGAAACAAAAGATGAACTGCTC
AGCAGTCTTCTATCAAGACAAGAAGCAGCAGCTGCCTCTTCATCTGCCAACCTTGTAGCAAACA
ATGTAAGAACCACCCTTTTACTAGTATTCTCGTGTGACATAAACTGATAAATGTCTGAATAACA
TAGTTTACTGGTGCTATTTTAATAGGGGGTGGTGCCACCACAATTGCCAACATCAGGTTTGTCA
GCTGATCAACAGGGAGCTTCATCCTTCTCACTTCAGTATGTGCAGCGGATGCTTGAAGAATCCC
TAGGGTCTGTTCAGAAGTCCATCCATGAGGACGTGAGAAATCTGCACATCGAACTTCTAAGACA
GTTTCACATGCAAGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2931
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021