Detail information of BGIOSGA012200_circ_ag.2


General Information
CircRNA Name BGIOSGA012200_circ_ag.2
ID in PlantcircBase osi_circ_004662
Alias 3:7863422|7866988
Organism Oryza sativa ssp. indica
Position chr3: 7863422-7866988  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA012200_circ_ag.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AATACCCAAAGATAGATTGACCCTCACCGTGAAGGCTCTTTGCCTAAGATAAGGTTTGTTGTCA
TCACTGTGCCACCCAATAGAAGCTCCCTTGCACCAAcattaggagcgtcagtgaccatggtgac
accaaggagcttctgcaacttctacttccagttctgaaggttatacagaagttgcctcgatatt
aagttctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTAGGAGCGTCAGTGACCATGGTGACACCAAGGAGCTTCTGCAACTTCTACTTCCAGTTCTG
AAGGTTATACAGAAGTTGCCTCGATATTAAGTTCTGAAGGATCCACAAAAGGAGTACTTCCTTA
TCACTGTTTCATGGAATTTCAGGTCAATGGCATCGACTTCTACATCAATGGGCACGACCACTGC
CTGGAACACATTAGCAGCAGAGACAGGTTAACATCATTTGACACAAAGTTTCCGCTTTTATGTC
ACAGTAATATAGAACAAAACATGTTTGCATAATCGATGAAACTTGTCTAACCTGAATGCATGCA
CTCCTATTGTTACAGTCCTATCCAATACTTCACAAGTGGAGGTGGTTCAAAAGCATGGAGAGGA
GTCTTGCAGCCAAATTCTGATAAGCTCCAGTTCTTTTACGATGGACAAGGGTTCATGTCCCTCC
AGATAAACCAGGACCAAGCTGACTTCATATTTTATGATGTTTCTGGGAACATCTTGTACAAGTG
GAGCAAGAGCAAAGCAAACTACCTCCAGCCCTCCACCTATATCACTGAAGCATGAGGCAGATGC
AAAACCACAAAACGGAGAATTAGCTTGGCTAAGATATTTGTATCAAATTTGAATGCATTATTGT
GGCACGCAAGGGAAGAGGACCGGAAAGGAAATAGGAAAGTATTTAAGCATGGCATGTGATTGAT
CTACTAAAGAAATTTGAGACAAGGCCGAGACCATCCTACTAGACTAGGAAAAGAGATGTTCAGT
ATGGTATCCATTAGATCTGATTCATACAACTTCTTGCCAGAGGACCATCGATTATGCCATGTAT
AATTTACAAAGAAGGCTTAAAACTCTAAAAGCTAGTAGTGACCTTTGCATATCGGCATCAGGGT
TCTTCAGTATTGCCAAGCATTCACATATAACCTTTGGAGAGAGAGAGAGAGAGACTTTGGGGGT
TTCTAAGCTGGTATTTTCATTTAAAAGAGACAATGAAAAGAAAATTTGATCTATGATAATCAAG
CATGTGTCGGTGAAGACGGCTATTAGTTACTGCTTCTGGAAAAAGGTTGTAATTCAGTACAGAG
TTGTGTACGTGTCCATTTGAATAAAAATTGCATATAACAGAATAAAATTATAATGAAAATTCTG
GCAAGCAAGTTATGAAAGGTAAAATGAGGCTTTAACATGCCATATAAAAGCTCTCCAAAATGCA
AAGCTAGATAAATCCAACATTCTTGACACATCGTTCTTTTCAAAGAAAAAAAATACTATAATTT
GAAACTAATTCTAGGTAACATCATCGCGACGTTATTACTATTAATGTATTGAAATTATCAGGTC
AACATTTAGTTCCCTTCAGTGCGTACCTGAGGAGAACAGGAACTGACAATAAAAATGGCCTCAC
TGGACAGCCAATATGGCAAAAATGTCAACAGCTTTCTCTGCAATTCTTCTGAATAATTCTCCCA
CATAGATACGGCTAATTCAAAATCACTCCATTCAAAATCAATCTCTACATTCTTATGTGATCCA
AATATGGTTTGTTCAAGGCCATGGTTGCATGGCAATGGTAGTTTTGTTCCTCTGGATTGACTAA
CAGGACAGCAGACTGTTCCTGAACCACCAGAAGTTTGTTTCCTCTTTGCTGACAGCTCAGGTGC
TTTCCAGTAGTAAAACTGCACCACCTGTTTCAGAGATTTGCAAATCATAGAACACTGACACGCT
TAACAGAACAGGATATAACACATTTGAATGCCATGTTTGGAAAGCAGGAATATCATAGGAAACA
GTTCCTTTTGTAAAGGAATTAGAAAAAAAAAAGCATATTCTAATGGGGCATAAATAATTTTTTA
TTTGTATTTTCTAAAAGATGTCAACTTATTTGAGGAATGTCATTCTCTAATACAACCACAGAAT
TTTCTGTTGTTATAGCATTCTCATGAAGATTTAGACTATAACATTGAAATAAAGGCATCTTACA
CGTGCAGTAAAGGATAATAAAGTTTGACTATTGTAATCTAATGGACATGATCTGCAGACTAAAA
CTACTTAAAAAGTGAAAGTATGTAGATACCTGAAGAGCATGCAAGCCATTGGCAAAAACTTTGT
CAAAGACATCATCTCCCCTACCAAGTCGTACTGGCTTCCCAAGCAACTCTATAGGGTCATCTTC
AGCGGGTGCAACAGATTTATTGTCTTCATCAATGCTTGAGTGGAAAGAGAACCCAAGAATGTGC
ACTCTAGCACATCGTACGTCAAAACCAGAATGGTCATAGGCAAACCAATACATTATATCAGAGG
CTGGCAAAGGAATATAAGAACTCTGATGAACTGGTTCATAGTTCAGTGATGTCTGAGAAAGAAA
GGAAAGGAGCTTTGGGTCCTCGTCATAAGCACTGTCTCTGGTGAACCAAAGAGTTAGGGTGAGT
CTTTCACCTTCAGTCACCTGCAAAAATAGCTGCACTTTATTAATAAACAAGAAAGGGCACGCAT
CAACCTCAGAAGAAAAATAAAATCTCTTGACAAGATAATACTTTGGCCACATATGAATTGATTG
TTTACAAAAAACAAGGTGCAAGGGAAAAGGATAGACATAAATTAGGACTAAATCATTGATAACA
AAATGTAGCCTCAATTACCTGTTGCAACTTAGAGCACACTCAAACAAATAATTTTATTTGATTC
ATCAAAACAACAATAATAGTAACAGATATACTAACATCTTGCTGATTATCCAAGTGAAAACAGA
AAATGTGACAAACAATGCCAATGAAAAGAATAGGCATGAACCCAGTACAGAAACAATCAACTGG
CCCATGCAGGAAACAGAAATGTACCTCATCTACACAATGGGTATTACTATTATCTGCAGTGTAG
ATGACAACATCCTGAAAACAACAGTACTTCTCAGAAATTCCAAGAATATATATTCATTTAATTA
TTAAAAAAAATGCATGCATGCAAACTGTAAATCAAAATGCATTAGCTTACACCAGCAACTGGAG
TAATAAAGGAAGGTTCACCATCCTGAAACTGCAAAATTCCACCTTTATAGTCCTTCCCATGATC
GTTTAAGTAGCACACTGCCTTTTGATTGAAAGATGGAAATGGTGCATTCCATGCCATATTTTAA
TTCAGAAGGAAAAAGGGTCAGAACAAGAACTGAGAAGAGTGTTAGTCAAAAAAAAGAACTGAGA
AGAGTACATTTGAGTAAAAAGGGCCGCATTGAAATATAAACAACTACAACAACTGAGAAAATGG
AAGAGTATATTTTGGACAGGACCTAGATAGTCCCACAAACAGAGATAAATTACTCATACAAAAT
AAGATTAACTAGATAATCATACAAAAAAAAATGCAATTCACAATATCAGAAGCACCGAAATGAA
TGCTTGCATGAAATACAGTTTGTTGGAACAGACAAAACAATATGTAGACATGAAAACAACTATA
AAAGTTGACTAAATACCCAAAGATAGATTGACCCTCACCGTGAAGGCTCTTTGCCTAAGATAAG
GTTTGTTGTCATCACTGTGCCACCCAATAGAAGCTCCCTTGCACCAA
Conservation Information
Conserved circRNAs osa_circ_018776*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021