Detail information of AT2G04160_circ_g.2


General Information
CircRNA Name AT2G04160_circ_g.2
ID in PlantcircBase ath_circ_012759
Alias At_ciR4821
Organism Arabidpsis thaliana
Position chr2: 1405427-1407318  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT2G04160
Parent gene annotation Subtilisin-like protease SBT5.3
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04160.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTGGAGATTTCATAAGCAAGGTCGTGGTCTAGATGAGCAGCGAATCCGTTGATGTGCTTTGTG
TATGAGTAGAAAATGGCGTCTGTGGCTCTCTCACGGctattgcaatggaaagtggcatcttttt
ggttttgacatattcccttccatcttgaaggaattggtcccaagccttcatctctaaagctctt
tgattctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTATTGCAATGGAAAGTGGCATCTTTTTGGTTTTGACATATTCCCTTCCATCTTGAAGGAATTG
GTCCCAAGCCTTCATCTCTAAAGCTCTTTGATTCTGGCCACACACCTTTTTACACATACACAAT
CAAATTTTAAAATATTAGTTTATGAAATTATAATCAACAACATATTCTTATTAATACAAAGATA
GTAAGTGGGTTTAAGTTACTAAAATCTAAAAATAAAAATACATAATGGTGTCTCATAATCAGAC
AACCAAATGAACCAATCATTTTAGTTGTGGCAACTTCTATTGCTTTTCTGAATCAATATTATAT
TATTCAAAGGAAGGGTATGAAAAGTTCTAGTTCTCAAGTATATCCCAACTTTATCATCCTAAGT
CCCAAGATTTTATGAGAAAGAAAAAGAAATTCGAACTAAAAACACCAATAACTATTAACCCAAT
ACAAACTTTTTCTTTTTATTAATCACTTGACATCATCTAGCTGAAACCGAAGAATTACGAAAAT
ACATTACAAAATCTCGAATTAGATTATCATGTTTAAAAGTTGGTTCATCATCATCTACAAGAAT
GGTTAAGATCTGTTACAGCTTCAAGTATAAAGAGCATTGCAAGAGTTTCTTTGATTATTGAGGA
AATTTTGGAACTTTTAGACCCGTAGTCTTCTTTTTCGGCCAGGACCAGCCTGTGATAAATACAT
TCCTAATAAAGAAGGTTCAAACTAGAGTACATTCTGTATATAGCACAATCTTCACTAAAGGATA
CTAAGCCACTAGACTATCCACTTGGTATTTATACTTTTACGATTTTTTTGAAAATTTAAGTTAT
TAGTCCATAAGTCATAACTCATGAATACTAAATTAATATAGAATACACATTACTCATATCTACT
ACTAGTGAAGTTACCTGCAGTAAATGCATTAAATTTATGTTAAAAGAAAAATGCATGGTGCCAA
AAACACCTTAATTGTACGATGAATTATTCACCAACTTTTCTATTCCAAAAACAAAAATTCTGTA
ATTTATATGGAAGGTGCTTTTTGATATATTTATTATCTCGATAAATGTTTATTTAATTCGTTTT
CGTAACTACTTTTGAAAGAAAAGTATTTACTACAGAATTTGGTATAAATAATACAACTTATAAA
GATTTAGTGTTTATGATTCAAGTCAAACTATACGATGCAGTCAACGTATAGAATATTAAAGATA
AGAAATGCCATAAGTCTATCTAGTTAAGAGAAGTGAATATGCATATTAATGAATATGCATATGC
GCACATGCTTGCATATATATATGGCCGATTTGATTCTTGCTGACATCTAGAGATCTTAACTACT
AGCTAATCTAATCTACACAACGAATATATATATTTCTTGTAATGCAAGTTTGGGAAATATATAG
TTTTAAAAGTAGGTACGTATCTTCCCAAAAACCCATCTCAAGGCTCTCAAAGTTGCAAAGGTTG
ACCAAGAAATAAAGAAATATAAATTACAAAGAGAGATAAAAAAAAAAAAAAAGATGAGAAAACG
AACCTGTATCGAGATTTGCAATAATGGTATCTTCTCCGAACCTAGCCTTTCTCCAAATGGAAGA
GGAAGGAACGTAAGAGTTATGTTCCAAACCCAAAAAGTCCCATGATCGAGTCGTGTGAAGCTTT
AAAGCTTTGTTTGGGAAGACAGACACAACTTCAGGGTGTTCTTGAGGAATAATCAAGAAAAGAG
AAAAGAGTCAAATCTTGTGAAGCACAAAGAGAGAAGAAGATAAAATGGTTATGTTTGTATACTT
ACTGGAGATTTCATAAGCAAGGTCGTGGTCTAGATGAGCAGCGAATCCGTTGATGTGCTTTGTG
TATGAGTAGAAAATGGCGTCTGTGGCTCTCTCACGG
Conservation Information
Conserved circRNAs NA
PMCS 0.108153229
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015