Detail information of Zm00001d042656_circ_g.1


General Information
CircRNA Name Zm00001d042656_circ_g.1
ID in PlantcircBase zma_circ_007719
Alias zma_circ_0001233
Organism Zea mays
Position chr3: 175635686-175640133  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d042656
Parent gene annotation Beta-galactosidase 16
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d042656_T001:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCTGTCTGTAGATTTACTGCCATTGCCGCTGCCCAGTGAACATAAGACGACCCTTTTGAATG
AAATGCAGCCTCAACTAGCTTATATTCATTTTCAATctgtgatatgattatggaatctcctgca
ttgttgattattcacaacttgattgaagtggttcatcttctcttcatccacagatcgccgcaac
agaaaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTGATATGATTATGGAATCTCCTGCATTGTTGATTATTCACAACTTGATTGAAGTGGTTCAT
CTTCTCTTCATCCACAGATCGCCGCAACAGAAAGGGATTTTTCAATTCTAGGGCATGGGTCACC
TCCAAACTTGTTTGCCCATACTGGAAGGACGCACTTCCTTCTTCCTAGGCAAGCCTGAAAGAAC
AAAGATAGTAATTCAGTTATTAGGAATTTGCGCTTTGTTGTAGCATCTTGGCAATAGTATACCA
CGTTGATGCAAATGTAGCACTGGGGTAGCAGAATTTTACATTCTTCACAACGAATTCAGATATT
TCTGCGTGGCAACTTCCTTGGCAGCTCTGTCCAGACCCTCTGCAGTCTTGGACAGGATTTCCAA
AGCTTGCGAATTCGATATCTGTTATGTGTTTGCCTTTCTCGCATCGGAGGTGAACAGCTGGATG
ATTTTCGCGTGACAAGAGAGATGGTGTAGAGAACTCGCTGACAGTACCATAGATTCTGGTAATG
GACATTGTGTTTACTGTTATCTGTAGTGGGTCGCCACCAGTTTCCTCCATGAGGACTAGGAGGT
TCTCTCCAGTCTTCAGAAAATATCGAGGTATATGATACCTTAGAAAAGAGAGCCAGACAATACA
TTTTACATTGGTCTGTCATGATTGTACAAAAAGAATTTGCTTTGCACTAGAACTAGTTTGAGTA
CTGACATGGATTGAGAAGATTGCCCACTGGGGGTTTTGAAGGAGACCCAGTACCGTCCAATGCT
CTGTCCATTAATCCACACTTCACCCTTTCCCATACTAGTTAGGTTCAATGTCACAGGATCATTT
CCCCATGGTGCGTCAAATGTTGTCTGTTAAACAACAGTAATTTTCCCAAGCTGTTAATCCAAAC
ACTAAGAGTAAATATATGCAAGTCAAGTACATCAGCACAGGTTTACGTCTTGTATACCTTATAC
CAGATAAGTGGCAGATGTATGGATTTGCTAAATGCAGTCCATTCTGCATGAGATGATCCTTCAG
ATGTGTAGATTTTATTTGTTTCTCCATATAAACCAACCTATACATTGCACACTTGAAAGTGAGC
ATGTGATGTTGATCCATCAATTCATAATTAACGTTGGATTGGATTGATTTACTTGGTGTTTCCA
CAGCTCAATGTTTATGGAATGTGGTCTCTGCTGTCTTCGTTTTATGCTCATCTTTCGCACTCCA
AAGGTTCTTCTCTCCATATATGCGCCAGAGTCCTTACAGTATGTGTATGAAACCCTAGGTTAAT
GCACATTCTAGGTACTATGATTTAATAATTTTTCACACTAAATAGAATGAAATGCTCCATGGAT
CCTTAAGCTTTTCTTATATTCTCATTTAGATCCATAAATTCTCAAAGTGACCATCTTGGTCCTT
GAACTTTTCAAGCGGTTAATTCTAAATTCACTATAGGTCTAATCATGGACATAAATTCACACTT
GGACCACTGTGTGAATTCATGAACCTAGATGAGAATACGGGAAAAATTCAAGGACCTACGGTGC
ATTTTACTCTTTTAAATACTTATGTGGACTTTGGAGTTATATTTTTTCTTTTCCTCTTTTCCCC
TATTGGATCTGAATAGTATTACCAGCTGTGGATGTGATAAATTGATAACATCAAGGTACGGTCT
AGTCATTTATTTATTTCATTTCAAGCAACACGGACAGATGGCAATAGGTTAGCTTTTGTTGTTT
GTGACCATATTCCATATATAATAAGTTGAGCCATTGTACCGGTGAACCAACCATGACGCATAAC
AGGGATATGGAGTTTTGTCCTTCCCTTAGTGAAATAGATACATTAAGAACGATGTTGCCAGGTT
TATCATGACTCCCGTGCACACTTCCTAGTAGAATATGGAAAATATATCAGACATAAATACGATA
AAAAAGTTTTAATTGTTCATTAACAACTTAGCCTAGACTGAATAACATTCCTATTTCTACTTTT
GTTGTGTACTCCATAGTTCATATACTTGCAAACGAGAGTGCAATCTATGTCCTTACCAACATAA
TCATTGTTAATGAAAGCATGTAAAATATGTGCATGTGCCTCAACGTTAAGCACTAAGTCACCAT
TCTCATTTCTTCTAGAGTTGTACCTGCATGATTTCATCATTATATGGTTATCAGGAATCAAGAA
AGTGCTGGAAATAGGAGTAAATGCTGAATGGTAGAAGCTGGGAAGAACCTAATCTTACATGGAA
AGGTACCAGAGATAATCTGTTTCGTCTTTTGTAGTTGAGAGGTGTTCGCATAGCTGGTTTTTGA
CATGTGAGATTTTGCTTGGTACTGCAGGAATTGGTTCTTTGAATAATTTCCACCTATGAGCATG
ATTGAGAGGTTGCACTACCTGTGCTGTTCTTAAACCATGCTGAGCATTTATCTGCCATAAAATT
TTCAACAACAAGCATTTAAGGTGTTCCGTACGTAAGCATTTTGAGTTTCGTCAATGTAACATGC
ACACCTTGCCTGTTTCAAATATTAGATCCCTGCATTGTGAGAGGATACTGATGGACTTAGGAGC
TAGCTGGAACACCCCTTCACCAAATTGAATGGTTGATACCTTATGCATGTCAAAGTTTACCAGG
AAAGCCACACACCCAGAATCTGTTGCAAAAACATGCCCCTGCAATACACCAAAATTTTCTCAGT
TAGATTGATGAAAAATATAGTAGTTTATTGGAAATATAAAAAACCAAGTTCACTCTAATTTTAC
CTCTTGTTGTTGACCAAATGAATGATTAGAATATGCTCCCCAAAGTAATGTCTCTGCAGATTGC
TTTACTGCAGCGTGCAGTTCTCTGAGATGAGCCCATGTCGGTTGCCATATTAATCCTGGATGTA
TGTTTGTTACTTCCAATGGATATTATTTAAATGCTGATGTTGTAAGGAAATAAATGTAATTATC
AAGTACTTGAATTTAACATAATATCCTTTCCATTGAATACAATTTTGTAGGAAACTCCCTATTC
TTCAAAGTTCCAACTGCTACAATATGTATGAATTGTACAATGTCTTGAGAAAATAGCGAGTAGT
ATAGATCAACAATGCTGCAAATTCAAAACTTTTGCCTGTTTCATGTAGAGGTTCTGCACCAAAG
CTACCATAGGGCTGTCCTAGAAGGGCTTCTGTGGTGGAAGAATTCTCAATGTTATAGTACGAAT
ACAACTAAGTTGTCATCGAGCATCAATTACCAACTAAATATGCTTTATGATCTGACATATTGGC
CTTTATGTGATCTTATAGGGTGGCCCTAGTCTGTTCGGCTGCCCTGCAGCCGCAGCAGCTGTAG
CTGTTCGGACTGCTGCAGTTGCAATCCATAAAGACAAAATACTGTAGAAACCGTTGTCGCAGCT
GGATTAAAGCCGCAACCAACATGGAGGCTTCCGAGCAGCACTTCTAGGTCCTGGGTTTAATTCC
CCTTGGGGGCGATTTTTTGGCTTAGTTAAAAAATCCCCTCGCTGTGTCACTCCTACCCGCTCCC
GGGTTATGTCCCACTAGTGATGGGGGCCAGGGTTCGGGGATTTTCTCGTCCGGGACCATGTTTC
GGTCTCTTCTTAATATAATACCGAGTTCCCTCCTCGGCCGAGTTTTTTTAGTCTGTGCGCCCAT
GTTATGTTCTTATTAGGGTATTTCATACAACAAATTTTCCGTTACTAGTTGTCCTCAACGTTGG
GCAAGTTAAATGAAAAGCTTACCATATTCATCAAGAGGGGCTCCATCATAATAGCTTGTTGTTA
CATAGGAAGATGCAACCCTTCCAAAGTTTGTTCCACCATGGTACTACATAAATCTTAACTCATG
TGAGAGGAGTAACAGAATAATTAAGAGATTCTTTTGAAAATAGTTTTGTCAGGTCTATAGCTTC
ATTTTTTCTACCATGTAGTAGTTTACAAAGCTCCCTTTCTTTCTCGCTATAAACAGTGCCACTG
CAAAGGCAAGGTCTGCTGCTGATCTATATCTTTGATCTTGACCATATAAAGGATAGCTGTATTC
AGGGGAAACATTGTGTTAGGTGTTTTACCAAACGGAGTATATGGTAGAAATATTAGAAGAAATG
CATGAGTTCTTGCTGCACCGAGATGTCCAGTTTTCTGTCCATAAAGCTGGTTTGTTTGGCGAAT
TTGGCCCTGGAAATGTTTCCCCACAGATGAGCCCATTGCAGGTATTAATCTAAGTCATATCATC
AACATTGAATTGATTTTCAAAAATCATATGCCAATTATAAGTCACTATAATGGTATAAATTTGG
CCATTGAGTCACTGACAATTGGATCTGGGGCATCATCCTGCTTACACATCATCCATGGAACACC
TGTCTGTAGATTTACTGCCATTGCCGCTGCCCAGTGAACATAAGACGACCCTTTTGAATGAAAT
GCAGCCTCAACTAGCTTATATTCATTTTCAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.120009177
Functional Information
Coding potential Y
Potential coding position 175638537-175635693(+)
175635751-175640131(-)
Potential amino acid sequence MSVAILIHIHQEGLHHNSLLLHRKMQPFQSLFHHGKLDLGHHPAYTSSMEHLSVDLLPLPLPSE
HKTTLLNEMQPQLAYIHFQSVI*(+)
MNHFNQVVNNQQCRRFHNHITD*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b