Detail information of AT1G47840_circ_g.1


General Information
CircRNA Name AT1G47840_circ_g.1
ID in PlantcircBase ath_circ_006217
Alias NA
Organism Arabidpsis thaliana
Position chr1: 17618245-17618395  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G47840
Parent gene annotation Hexokinase-like 1 protein
Parent gene strand -
Alternative splicing 1_circ_ag.3 AT1G47840_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT1G47840.1:1
AT1G47840.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCCTAATTGCACGCTACGCACCCGAAAATTTGTACCTCCTAAATCCAATGCATAGAACAACC
CTTCCTCATTCctcacttgtaccaatcataagcttttgagaaatagatatttgttcagattcgg
tagctaagactcgctctttcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCACTTGTACCAATCATAAGCTTTTGAGAAATAGATATTTGTTCAGATTCGGTAGCTAAGACT
CGCTCTTTCTTTCCTCCTAATTGCACGCTACGCACCCGAAAATTTGTACCTCCTAAATCCAATG
CATAGAACAACCCTTCCTCATTC
Conservation Information
Conserved circRNAs NA
PMCS 0.245735152
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017