Detail information of Os03g0143800_circ_g.6


General Information
CircRNA Name Os03g0143800_circ_g.6
ID in PlantcircBase osa_circ_017891
Alias NA
Organism Oryza sativa
Position chr3: 2440654-2443614  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0143800
Parent gene annotation PIROGI/Specifically Rac1-associated protein 1 (PIR/SRA1)-like pr
otein, Homolog of SCAR/WAVE complex components, Control of epide
rmal cell morphogenesis (Os03t0143800-01)
Parent gene strand +
Alternative splicing Os03g0143800_circ_g.1 Os03g0143800_circ_g.2 Os03g0143800_circ_g.3 Os03g0143800_circ_g.4 Os03g0143800_circ_g.5 Os03g0143800_circ_g.7 Os03g0143800_circ_g.8 Os03g0143800_circ_g.9 Os03g0143800_circ_g.10 Os03g0143800_circ_g.11 Os03g0143800_circ_g.12 Os03g0143800_circ_g.13
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0143800-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCTTGATAGTTCATTTACCTACTTATGTGATGATGGTGAGAAGTACTTCGTCAAACCCCTG
CGGTTTGACGCCATATTCAAGCTAAGAAGAGTAATGgtagtacgctggaactacactggagaag
aacggagggctcttcttgaattaattggttacataaaaagtattggattgatgatgcaacgctg
tgacacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGTACGCTGGAACTACACTGGAGAAGAACGGAGGGCTCTTCTTGAATTAATTGGTTACATAA
AAAGTATTGGATTGATGATGCAACGCTGTGACACCTTAGTGTCTGAAGCCTTATGGGAAACGAT
ACACATGGAGGTCCAAGATTTTGTACAGGATAAACTAGATACTATGCTCCGTACAACATTTCGG
AAGAAGAAGGACCTATCTAGGTTACTTGTTCGTCTCAACCATCCTTATTTTAACATGATACTGT
AAATTTGCCACCAGCAGTTCCAATAGGCTCCAATAAATCTTGTTCTATGTTTAGTTCAATCTGG
GGATGACATAGTTACTTATGTCAATTCTGTATTTGTCATTTATATTTATTTATGTATGATGCCA
ATTCTTCCTGAAATTTGAGAATTCATTTGGGAACTTAAATTTAAGTTTGTCCATTTTTCCTTTG
CTTTTCTTTCAGGATCCTCTCTGATATGCGAACCCTCTCCGCAGATTGGATGGCCAACACTAGC
AAGGGAGATCCAGAACACAACTCGTTAGAAACAGAGGAAATGAGACAAAGCACATTCTACCCAA
GGCCAGTTGCACCAACAGCTGCACAGGTTTTTATTAATACTTTATCATGTGAAAGCTTTTGCTT
CAGTAGCTCTATGTTCTTACAGTAACAAAGGGGTTAACTATCTCATCTATATTAGTTGGAGTTT
AGAAATTTGGTCTGCTATTTTGCACCATTGATGTTCCACATGTAAAGACTTTCCCTTATTCCCT
TGTATTTCTAGCATAAAAACTATCCAGTTTAATAATTATGTTGAGTAAAATTTGATGATAAACC
ATGAGTATAACACATTGTAAAATTCTCCATTTAACTTTTCCGTTTTCCAATTTCACATCATACT
GCAACTTTAGTTGCCGTGTTCTAATGATCTTCTGTTCACCCTGCTTCTGATTTTTAACTTTTGT
TCCTTTTACCAATATGTTTACAGATTCATTGTTTGCAATTTCTCATCTGTGAGCTTGTATCTGG
TGGTAATATGAGAAAACCTGGAGGACTATTTGGCAATAGTGGCTCTGGAATACCTGTGGAAGAT
CTTAAACAGCTAGAGACATTTTTCTATAAGCTCAGTTTTTTCTTGCATATTTTGGACTATACAG
GTGCCTCGCCTTGATGCCTTCTCAAACTTAGAAATAGCTACTATCATGTTATAATTTCGCTTTA
CGTTTGGTGTGTTTTTTATGCTTACTGAAACTTAAATTATCATATGTTTTCTTAGGGAAATATG
CTCACTTTACTATAATATTTTTAGTGCTCTAGAATTGCCACTTACTACCTCTGTCCCAAAATAC
GGGTATTAAGGAAGTAGGTGGAATTAAATGGGTGAAGGTTGTGATTGGTTAAGAAGAGGAAGTA
CATGGAGAAATTAATTGGGGGAAAACTGTGATTGGTTGTGAAGAGAATGTAGGTGGAGAAGTTG
TTGTATTTTGGGACAAATTTTGAATGCTAGAAGTTGCTATATTTTGGGAGGGAGTAAATTTTAA
GAGTTCATATATACTGTGGTGATCTTGTTTCATTGGATACTAACTTAACTGCTAATATCTGGGG
TACATGCAGCTACAATTGGTACTTTAACTGATCTTGGATTTCTTTGGTTCCGAGAGTTTTACCT
GGAATCATCTCGTGTTATCCAGGTCAGCATTTTTTGCTTGCTTATTCTAGTTTGCCTTATCAGA
GTGATACTAGTGGGGGTCTCCACTGATAGGACATACTACTAAACAGTGCATTTAACTAGCAAGC
AGTGCTTAAATGAAATTAAGTTCCTAGATCAATTTTATTCTTACTTCGCATACTCAATGGTGTT
CCTCTGGCTATTGCAGCAATCCAAATCATCATAAGAAATCTTCATAAAGGAAGATTGCTGTTTT
GTAGTGCTAATATTAGCATGTCTTGTTGACAGTTTCCAATTGAATGTTCACTCCCCTGGATGCT
GGTTGAGCACGTCACTGAAACACAGGATGCTGGTCTTCTTGAAAGTGTTTTGATACCATTTGAC
CTTTACAATGACTCTGCCCAGCATGCGTTAACTTGTCTCAAGCAGAGATTTCTTTATGATGAAA
TTGAAGCTGAGGTAAGCAATTATCGTTGTCGTAGAGTTTTGAATTTCAATATAAAATTTCCCAT
TACACCCTTTCCTTATCATTACTCTTCCTTCTGTTTCATAGATTAACATTTTCATTCTGGAATC
TATTCTTATTTTTTACAATGTAGTATTGTTTATATTCTCTTGTTATTTTCACTTGCTTGTATAA
TTTTCTGTTCGATCCTTTACTAAATATGTCATAATTAATAGGCATGAAGAGTCAATTTTTCAAT
AAATTTACTCTATAATTATAAAATCTATGTATGCATGATTGTGTGTGCACCTATCAACGTAATG
CCCAGGCCCAAATTGTTTGATCTATGTGTCGGCTCGTTATGGTGGTCTGTGTGGTATTCATGTG
TTTATTCTAGATGCATATAAACTCTTGAGAAACCATGCTGGGTCAGCCCTTAGGCAAAGCTTAT
GTATTGGTTTGGCTGGAAATGCTTGTGGTATTGCAATTAATCCCTTGTTTTGCATTAAATATCT
TACTGGTGCTACTTGTGTGCTGACTTGTAGGTCGATCTTTCCTTCGATCTTCTTGTTGAAAAGC
TTAATGAGATCATCTTTACATATTACAAGAGTTGTGCAGCAAGGTATCCACCTTCTTTCAGTTT
TTTCTATTTTAATATTAGAAATGGATATGTTGACCAAGAAATGCGAATAGCAAATTGGTTGATG
TTGGGTGTCTTTTTCTGCTAATTATTTCCCTCCTGTATGCAGTACTCTTCTTGATAGTTCATTT
ACCTACTTATGTGATGATGGTGAGAAGTACTTCGTCAAACCCCTGCGGTTTGACGCCATATTCA
AGCTAAGAAGAGTAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.221241126
Functional Information
Coding potential Y
Potential coding position 2440733-2443611(+)
Potential amino acid sequence MMQRCDTLVSEALWETIHMEVQDFVQDKLDTMLRTTFRKKKDLSRILSDMRTLSADWMANTSKG
DPEHNSLETEEMRQSTFYPRPVAPTAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDL
KQLETFFYKLSFFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVEHVTET
QDAGLLESVLIPFDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKLNEIIFTYYKSCAA
STLLDSSFTYLCDDGEKYFVKPLRFDAIFKLRRVMVVRWNYTGEERRALLELIGYIKSIGLMMQ
RCDTLVSEALWETIHMEVQDFVQDKLDTMLRTTFRKKKDLSRILSDMRTLSADWMANTSKGDPE
HNSLETEEMRQSTFYPRPVAPTAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDLKQL
ETFFYKLSFFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVEHVTETQDA
GLLESVLIPFDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKLNEIIFTYYKSCAASTL
LDSSFTYLCDDGEKYFVKPLRFDAIFKLRRVMVVRWNYTGEERRALLELIGYIKSIGLMMQRCD
TLVSEALWETIHMEVQDFVQDKLDTMLRTTFRKKKDLSRILSDMRTLSADWMANTSKGDPEHNS
LETEEMRQSTFYPRPVAPTAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDLKQLETF
FYKLSFFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVEHVTETQDAGLL
ESVLIPFDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKLNEIIFTYYKSCAASTLLDS
SFTYLCDDGEKYFVKPLRFDAIFKLRRVMVVRWNYTGEERRALLELIGYIKSIGLMMQRCDTLV
SEALWETIHMEVQDFVQDKLDTMLRTTFRKKKDLSRILSDMRTLSADWMANTSKGDPEHNSLET
EEMRQSTFYPRPVAPTAAQIHCLQFLICELVSGGNMRKPGGLFGNSGSGIPVEDLKQLETFFYK
LSFFLHILDYTATIGTLTDLGFLWFREFYLESSRVIQFPIECSLPWMLVEHVTETQDAGLLESV
LIPFDLYNDSAQHALTCLKQRFLYDEIEAEVDLSFDLLVEKLNEIIFTYYKSCAASTLLDSSFT
YLCDDGEKYFVKPLRFDAIFKLRRVM(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017