Plant Circular RNA Database

Detail information of POPTR_0018s13870_circ_g.2

			
						 General Information
					
						CircRNA Name
						POPTR_0018s13870_circ_g.2
					
						ID in PlantcircBase
						pop_circ_004199
					
						Alias
						Chr18:16200935-16204156
					
						Organism
						
							Populus trichocarpa						
					
						Position
						
							chr18: 14166270-14169491  JBrowse»						
					
						Reference genome
						
							Populus trichocarpa genome v3.0 						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							POPTR_0018s13870						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							POPTR_0018s13870_circ_g.1 						
					
						Support reads
						NA
					
						Tissues
						stem xylem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						POPTR_0018s13870.1:10

General Information
CircRNA Name	POPTR_0018s13870_circ_g.2
ID in PlantcircBase	pop_circ_004199
Alias	Chr18:16200935-16204156
Organism	Populus trichocarpa
Position	chr18: 14166270-14169491 JBrowse»
Reference genome	Populus trichocarpa genome v3.0
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	POPTR_0018s13870
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	POPTR_0018s13870_circ_g.1
Support reads	NA
Tissues	stem xylem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	POPTR_0018s13870.1:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCACTGGCTTGACAACTTTACGGAGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACAC
TTGTATCTCCAACATAAAGAATATCAAATGCAACATaaaacatcatatttgaaaatatcaaagt
ttcccccttgatgtcagaaatatcagtctgaattaaatgagatggaacaacagacacactcttt
ttctctcc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 972
Transcript exons: 14166270-14166473,14166604-14166691,14166874-14166922,14
167023-14167118,14167409-14167492,14167597-14167655,1416
7884-14167918,14167996-14168120,14168462-14168537,141693
36-14169491
AAAACATCATATTTGAAAATATCAAAGTTTCCCCCTTGATGTCAGAAATATCAGTCTGAATTAA
ATGAGATGGAACAACAGACACACTCTTTTTCTCTCCTTTCCTAGAGGATTTTATGTGTGTCGGT
TTGCTATCTTGCACATATCCGTACCCTTTTCCTTTTTGTGTGGTACCATTACTTGAATGTACTA
GCTCTACAAATGACTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTCACTCTGTCAAT
ACGCGGAAATCTCAAGCTGTATGGGGCAGAAAACACCTCAGAACTTATAGTCCGAATATCACTG
GTAATGGAAAGTATAATTGATTTGTCAGGGTTTTCAATCCACACATCTGGTCTCTCTTTTGAAT
TATTTGTAACTTGATAAAAACTTGGTGGTGAGTTCTTTGGGTATTCATTCTTCCTAAAATAAGG
CTTTAGTTTGGAGACAACAGTATCCAGCTCCTCATCTGACAGCCCATTGCCCACTCTGCAAAAG
GAGATAAATCGCCTGGGATATGTATTAGAAGCAGGACGCTCTGCTAGACCCAACAAGAATTGAG
CCACCTCTCCTCCACGACGTCCAGAACCATAGTATCCCCCTATGATAAGAACATCTAAGTCAGA
ACCAGCACGAATGTACTCAGGCTTCAGTTTCAACCACTTTCCACTCCGATCACTTGGTTCCCAT
TTGGAACCAAGGTCTTTTAATACAATACCTTCATCCCTGTTTTCAATGGTTTCCTTAAAAAACT
TCTCAATGTCATCCACGTTATATGCAATAAGCGAACAATAAGGTTCCCCAGGAAGACGATGAGC
ATTAAGACCCCCATTAGGTACTAAGATCTCTAAACGACCCTTCACTGGCTTGACAACTTTACGG
AGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACACTTGTATCTCCAACATAAAGAATAT
CAAATGCAACAT"
						
					

						Genomic sequence
						
							AAAACATCATATTTGAAAATATCAAAGTTTCCCCCTTGATGTCAGAAATATCAGTCTGAATTAA
ATGAGATGGAACAACAGACACACTCTTTTTCTCTCCTTTCCTAGAGGATTTTATGTGTGTCGGT
TTGCTATCTTGCACATATCCGTACCCTTTTCCTTTTTGTGTGGTACCATTACTTGAATGTACTA
GCTCTACAAATGCTGCAGTAAGAGAAAGGAAACAATTACCAAACTAGCTTAAGCGAGCTAGACC
AAAGTTCAATAGGTCAAATAATAAATTTATACAGCGCCAGTGATGCATGGAAAATCTGAACACA
TTATGTGTCCTTACACTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTCACTCTGTCA
ATACGCGGAAATCTCAAGCTGTATGGGGCAGAAAACACCTGGAAATCAGAAAGTGAACTGAGTT
CAGGGTTGATCAGACAGGTATAAGCAGGAGTTATGATCAAGGAAGCATAACACGATTTTCAAAG
GACAAAAACATTATGTTCTTCAAAAAAAAGAAAATAAACCAAATTTGACACTTCTAAACTAGGA
AGAACTTAAATACTAAAGTTACACATACCTCAGAACTTATAGTCCGAATATCACTGGTAATGGA
AAGTATAATTGATCTACAAAAGTTAGGGCAAGAAAAAAATATTATGGGCCAGAATAAAATCAGT
AGAATACATATTCCATCCAATGTAACAGGAACCAGAACAGAAATTTTACTTGTCAGGGTTTTCA
ATCCACACATCTGGTCTCTCTTTTGAATTATTTGTAACTTGATAAAAACTTGGTGGTGAGTTCT
TTGGGTATTCATTCTTCCTGAGAAAAAGTACATGTGAAAAGATACAAGTAAATATCTTTATGAT
AGCATCAACAAGATGCTCGAAGATGGACCAAAACTTCCAAATATGAGACGGTTCTAAGGCTACA
CAGGCAAGGCCTTTGCTTTAGAAAAATGGACAATGCATGCCACCTAACAAAGACTATATGGCAA
GTAATGATGAAAGTAAATCCTATTGTCAGACGATTTCAGTTCCATCCACAGCTTTGCAATGCTT
CTCTTGAGTGAGTGATACAAGCATGTTTTAAACTCAGAATTCCAAAAGTACCTAAAATAAGGCT
TTAGTTTGGAGACAACAGTATCCAGCTCCTCATCTGACAGCCCATTGCCCACTCTGCAAAAGGA
GATAAATCTACAAAAGAAAAGAGTGACTTCATGTGCATTGAATTTTACATAGAATATCAACTAG
TACATAATTATATTTACAGAAAATTGTCGATAGGGGTAAATACTTACCGCCTGGGATATGTATT
AGAAGCAGGACGCTCTGCTAGACCCAACAAGAATTGAGCCACCTGCAGTTTGTAAGAAAATTCT
TATTCTGAAGGCCAAAACATTAAGATCACATAGCAAACAGGATCCTAAGAAAGAAGCTGAAGAA
ACAATCCTATCCTACAGCATTTTTCTGCGAGTGGCAGTTCAACACCTCCATCACTGCACTAGGA
AATCGTTTCAATATTTCCTTTTCCCTAGATAAACAGTGTAAAGAAGAAAAAAATTAGAAAGAAG
GATGGCAAACAAACCTCTCCTCCACGACGTCCAGAACCATAGTATCCCCCTATTGACAAATACA
TAAACAGTGAAACGCATTCAATTTCTTTAGAGGAACTAAAATTAAGAGAAACGAGTACAGACCT
ATGATAAGAACATCTAAGTCAGAACCAGCACGAATGTACTCAGGCTTCAGTTTCAACCACTTTC
CACTCCGATCACTTGGTTCCCATTTGGAACCAAGGTCTTTTAATACAATACCTTCATCCCTAAG
AGCATAGATCATTTAATAAATAAGAAATATTTCAACTCTTAGAAAAAAAAAAAAAAGTTTCACA
TTTATACACATGCTATGGACATGTTTCTCTGTACGAACAAATTTTGGAGTGGGGGGGCTGGAAA
TTGCAAGTTCATGTTTGTGAAGATACGGGAGACAATATTACAAGTTCATGGAAGGATTGAAGCA
CATTAGTAACTCCCAAGTTTCAATATCACTAAAAATAAGGCACAAGCTGTCCACACTAAGTAAC
AGCCACTCCAACCTAACAGATTTAGTGGGTGTTATTAGAAGAAGATTTATAACATTAATTAAAT
GAAAGAGAATACCAACCTGTTTTCAATGGTTTCCTTAAAAAACTTCTCAATGTCATCCACGTTA
TATGCAATAAGCGAACAATAAGGTTCCCCTGTATGATTAGTGTGAGAAAATTACTAATAATCCA
TAAAAATAGACATCACGTAAAACATTCACATAATAAAATTTTATATACATATACTAGAGCTTAG
GGTTAAAATGCCAAGCAGTACAGTATCCTGCATATCCTAATGAGTCTGCATATCCAGACAAGCA
ACAACCATGAGTAAGTACTAAGCCAAACTGAGTAGGTGTTTGGAGGGGGGGTGGGGGGGATACA
CCTAGCAAGTACTTTAGCTAGGAGTTGAGCATCCACTTGACTTGGGTTGATAACCTCCCAAGGA
CGCTTGACATTAGGATTCAAATATAGAAAAAACCAATCGGAAACATAATATATAAAAGGTTTTT
AAAATTCATTACTCGGATTTTATAACTATTAAATGAAAAAAAAAAAGAGGAAATCTAATCTATT
CATGTTGGATTCATAATATATATAAACATTCATCAGGCCTATTCATTTAAACCCACCAAACCAA
TAAGTCAAATCAACTTGACTTAATTGGTTTATTTTGGGCTCCAAATAGACCCAGCCCAACCAGT
CCGAACCAGCACATGCCTAAGGTCACTACCTAAGCTGCTACAGAAAATTCTACTCACTACCTAA
GTTGCAAACACAGTTAGTGCCAGCAATGATCACAGACTACCAAGGAAACAAGTCACTGAATTTA
CTTAGAAAAATCAAACAATTTTAGCTTGAACAACTTCATTTATACGCTACAGTCTACATCACAT
GAGAAGATTATTGAATGCATCAATTATGCACAAATGATACCAATGTTAATTTGTGTACCAGGAA
GACGATGAGCATTAAGACCCCCATTAGGTACTAAGATCTCTAAACGACCCTTCACTGGCTTGAC
AACTTTACGGAGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACACTTGTATCTCCAACA
TAAAGAATATCAAATGCAACAT
						
					

			
		

Sequences
Splice junction sequence	TTCACTGGCTTGACAACTTTACGGAGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACAC TTGTATCTCCAACATAAAGAATATCAAATGCAACATaaaacatcatatttgaaaatatcaaagt ttcccccttgatgtcagaaatatcagtctgaattaaatgagatggaacaacagacacactcttt ttctctcc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 972 Transcript exons: 14166270-14166473,14166604-14166691,14166874-14166922,14 167023-14167118,14167409-14167492,14167597-14167655,1416 7884-14167918,14167996-14168120,14168462-14168537,141693 36-14169491 AAAACATCATATTTGAAAATATCAAAGTTTCCCCCTTGATGTCAGAAATATCAGTCTGAATTAA ATGAGATGGAACAACAGACACACTCTTTTTCTCTCCTTTCCTAGAGGATTTTATGTGTGTCGGT TTGCTATCTTGCACATATCCGTACCCTTTTCCTTTTTGTGTGGTACCATTACTTGAATGTACTA GCTCTACAAATGACTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTCACTCTGTCAAT ACGCGGAAATCTCAAGCTGTATGGGGCAGAAAACACCTCAGAACTTATAGTCCGAATATCACTG GTAATGGAAAGTATAATTGATTTGTCAGGGTTTTCAATCCACACATCTGGTCTCTCTTTTGAAT TATTTGTAACTTGATAAAAACTTGGTGGTGAGTTCTTTGGGTATTCATTCTTCCTAAAATAAGG CTTTAGTTTGGAGACAACAGTATCCAGCTCCTCATCTGACAGCCCATTGCCCACTCTGCAAAAG GAGATAAATCGCCTGGGATATGTATTAGAAGCAGGACGCTCTGCTAGACCCAACAAGAATTGAG CCACCTCTCCTCCACGACGTCCAGAACCATAGTATCCCCCTATGATAAGAACATCTAAGTCAGA ACCAGCACGAATGTACTCAGGCTTCAGTTTCAACCACTTTCCACTCCGATCACTTGGTTCCCAT TTGGAACCAAGGTCTTTTAATACAATACCTTCATCCCTGTTTTCAATGGTTTCCTTAAAAAACT TCTCAATGTCATCCACGTTATATGCAATAAGCGAACAATAAGGTTCCCCAGGAAGACGATGAGC ATTAAGACCCCCATTAGGTACTAAGATCTCTAAACGACCCTTCACTGGCTTGACAACTTTACGG AGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACACTTGTATCTCCAACATAAAGAATAT CAAATGCAACAT"
Genomic sequence	AAAACATCATATTTGAAAATATCAAAGTTTCCCCCTTGATGTCAGAAATATCAGTCTGAATTAA ATGAGATGGAACAACAGACACACTCTTTTTCTCTCCTTTCCTAGAGGATTTTATGTGTGTCGGT TTGCTATCTTGCACATATCCGTACCCTTTTCCTTTTTGTGTGGTACCATTACTTGAATGTACTA GCTCTACAAATGCTGCAGTAAGAGAAAGGAAACAATTACCAAACTAGCTTAAGCGAGCTAGACC AAAGTTCAATAGGTCAAATAATAAATTTATACAGCGCCAGTGATGCATGGAAAATCTGAACACA TTATGTGTCCTTACACTGCACATCAAGACATTCATGCCAAGGCTTGTCATATCTCACTCTGTCA ATACGCGGAAATCTCAAGCTGTATGGGGCAGAAAACACCTGGAAATCAGAAAGTGAACTGAGTT CAGGGTTGATCAGACAGGTATAAGCAGGAGTTATGATCAAGGAAGCATAACACGATTTTCAAAG GACAAAAACATTATGTTCTTCAAAAAAAAGAAAATAAACCAAATTTGACACTTCTAAACTAGGA AGAACTTAAATACTAAAGTTACACATACCTCAGAACTTATAGTCCGAATATCACTGGTAATGGA AAGTATAATTGATCTACAAAAGTTAGGGCAAGAAAAAAATATTATGGGCCAGAATAAAATCAGT AGAATACATATTCCATCCAATGTAACAGGAACCAGAACAGAAATTTTACTTGTCAGGGTTTTCA ATCCACACATCTGGTCTCTCTTTTGAATTATTTGTAACTTGATAAAAACTTGGTGGTGAGTTCT TTGGGTATTCATTCTTCCTGAGAAAAAGTACATGTGAAAAGATACAAGTAAATATCTTTATGAT AGCATCAACAAGATGCTCGAAGATGGACCAAAACTTCCAAATATGAGACGGTTCTAAGGCTACA CAGGCAAGGCCTTTGCTTTAGAAAAATGGACAATGCATGCCACCTAACAAAGACTATATGGCAA GTAATGATGAAAGTAAATCCTATTGTCAGACGATTTCAGTTCCATCCACAGCTTTGCAATGCTT CTCTTGAGTGAGTGATACAAGCATGTTTTAAACTCAGAATTCCAAAAGTACCTAAAATAAGGCT TTAGTTTGGAGACAACAGTATCCAGCTCCTCATCTGACAGCCCATTGCCCACTCTGCAAAAGGA GATAAATCTACAAAAGAAAAGAGTGACTTCATGTGCATTGAATTTTACATAGAATATCAACTAG TACATAATTATATTTACAGAAAATTGTCGATAGGGGTAAATACTTACCGCCTGGGATATGTATT AGAAGCAGGACGCTCTGCTAGACCCAACAAGAATTGAGCCACCTGCAGTTTGTAAGAAAATTCT TATTCTGAAGGCCAAAACATTAAGATCACATAGCAAACAGGATCCTAAGAAAGAAGCTGAAGAA ACAATCCTATCCTACAGCATTTTTCTGCGAGTGGCAGTTCAACACCTCCATCACTGCACTAGGA AATCGTTTCAATATTTCCTTTTCCCTAGATAAACAGTGTAAAGAAGAAAAAAATTAGAAAGAAG GATGGCAAACAAACCTCTCCTCCACGACGTCCAGAACCATAGTATCCCCCTATTGACAAATACA TAAACAGTGAAACGCATTCAATTTCTTTAGAGGAACTAAAATTAAGAGAAACGAGTACAGACCT ATGATAAGAACATCTAAGTCAGAACCAGCACGAATGTACTCAGGCTTCAGTTTCAACCACTTTC CACTCCGATCACTTGGTTCCCATTTGGAACCAAGGTCTTTTAATACAATACCTTCATCCCTAAG AGCATAGATCATTTAATAAATAAGAAATATTTCAACTCTTAGAAAAAAAAAAAAAAGTTTCACA TTTATACACATGCTATGGACATGTTTCTCTGTACGAACAAATTTTGGAGTGGGGGGGCTGGAAA TTGCAAGTTCATGTTTGTGAAGATACGGGAGACAATATTACAAGTTCATGGAAGGATTGAAGCA CATTAGTAACTCCCAAGTTTCAATATCACTAAAAATAAGGCACAAGCTGTCCACACTAAGTAAC AGCCACTCCAACCTAACAGATTTAGTGGGTGTTATTAGAAGAAGATTTATAACATTAATTAAAT GAAAGAGAATACCAACCTGTTTTCAATGGTTTCCTTAAAAAACTTCTCAATGTCATCCACGTTA TATGCAATAAGCGAACAATAAGGTTCCCCTGTATGATTAGTGTGAGAAAATTACTAATAATCCA TAAAAATAGACATCACGTAAAACATTCACATAATAAAATTTTATATACATATACTAGAGCTTAG GGTTAAAATGCCAAGCAGTACAGTATCCTGCATATCCTAATGAGTCTGCATATCCAGACAAGCA ACAACCATGAGTAAGTACTAAGCCAAACTGAGTAGGTGTTTGGAGGGGGGGTGGGGGGGATACA CCTAGCAAGTACTTTAGCTAGGAGTTGAGCATCCACTTGACTTGGGTTGATAACCTCCCAAGGA CGCTTGACATTAGGATTCAAATATAGAAAAAACCAATCGGAAACATAATATATAAAAGGTTTTT AAAATTCATTACTCGGATTTTATAACTATTAAATGAAAAAAAAAAAGAGGAAATCTAATCTATT CATGTTGGATTCATAATATATATAAACATTCATCAGGCCTATTCATTTAAACCCACCAAACCAA TAAGTCAAATCAACTTGACTTAATTGGTTTATTTTGGGCTCCAAATAGACCCAGCCCAACCAGT CCGAACCAGCACATGCCTAAGGTCACTACCTAAGCTGCTACAGAAAATTCTACTCACTACCTAA GTTGCAAACACAGTTAGTGCCAGCAATGATCACAGACTACCAAGGAAACAAGTCACTGAATTTA CTTAGAAAAATCAAACAATTTTAGCTTGAACAACTTCATTTATACGCTACAGTCTACATCACAT GAGAAGATTATTGAATGCATCAATTATGCACAAATGATACCAATGTTAATTTGTGTACCAGGAA GACGATGAGCATTAAGACCCCCATTAGGTACTAAGATCTCTAAACGACCCTTCACTGGCTTGAC AACTTTACGGAGCAGCTCATGCCTTTCCTTCAAGGTTTGGTGAATCACACTTGTATCTCCAACA TAAAGAATATCAAATGCAACAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.396240273

Conservation Information
Conserved circRNAs	NA
PMCS	0.396240273

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							14169425-14166282(+)
14166281-14166272(-)
						
						Potential amino acid sequence
						
							MPFLQGLVNHTCISNIKNIKCNIKHHI*(+)
MMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGEPYCSLIA
YNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGS
GRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPP
SFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECL
DVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETL
IFSNMMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGEPYC
SLIAYNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGG
YYGSGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPK
NSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPW
HECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIK
GETLIFSNMMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPG
EPYCSLIAYNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVL
IIGGYYGSGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKN
EYPKNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRY
DKPWHECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDI
SDIKGETLIFSNMMF(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	14169425-14166282(+) 14166281-14166272(-)
Potential amino acid sequence	MPFLQGLVNHTCISNIKNIKCNIKHHI*(+) MMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGEPYCSLIA YNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGGYYGS GRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPKNSPP SFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPWHECL DVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIKGETL IFSNMMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPGEPYC SLIAYNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVLIIGG YYGSGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKNEYPK NSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRYDKPW HECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDISDIK GETLIFSNMMFYVAFDILYVGDTSVIHQTLKERHELLRKVVKPVKGRLEILVPNGGLNAHRLPG EPYCSLIAYNVDDIEKFFKETIENRDEGIVLKDLGSKWEPSDRSGKWLKLKPEYIRAGSDLDVL IIGGYYGSGRRGGEVAQFLLGLAERPASNTYPRRFISFCRVGNGLSDEELDTVVSKLKPYFRKN EYPKNSPPSFYQVTNNSKERPDVWIENPDKSIILSITSDIRTISSEVFSAPYSLRFPRIDRVRY DKPWHECLDVQSFVELVHSSNGTTQKGKGYGYVQDSKPTHIKSSRKGEKKSVSVVPSHLIQTDI SDIKGETLIFSNMMF(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2021

circRNA

Detail information of POPTR_0018s13870_circ_g.2

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