Detail information of AT2G25140_circ_g.1


General Information
CircRNA Name AT2G25140_circ_g.1
ID in PlantcircBase ath_circ_014713
Alias NA
Organism Arabidpsis thaliana
Position chr2: 10698258-10700464  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G25140
Parent gene annotation Chaperone protein ClpB4, mitochondrial
Parent gene strand -
Alternative splicing AT2G25140_circ_g.2 AT2G25140_circ_g.3 AT2G25140_circ_g.4 AT2G25140_circ_g.5 AT2G25140_circ_g.6
Support reads 4
Tissues seedlings
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G25140.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGAAGCAGATACTTCCTTCATTACTGCTTTCAACCTCTCCTCAAAATCTCCTCGAAATTTGGC
ACCAGCAAGAAGTGAACCCATGTCGAGAGATATCAActgtaactctacgattttggagatttcg
ttagaatccagcggctggaaaactatgtactcgtcaattctgttcatgaactcaggcctgaaat
tttgtctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGTAACTCTACGATTTTGGAGATTTCGTTAGAATCCAGCGGCTGGAAAACTATGTACTCGTCA
ATTCTGTTCATGAACTCAGGCCTGAAATTTTGTCTTGCTAACTCCACAACTTGCCGCTTCATTA
TCTCATAAACTGCTTCTTTGCTGTCTTCATTGTTGCGGAGGGTCTCAAGTATGTGGTGAGATCC
TATATTCGACGTCATAATTACAACACAGTTTTTGAAACTTACGGTCCTTCCTTGAGAATCAGTT
ATTCTTCCATCGTCTAGCAGTTGTAGCAAGATATTAAAGACATCAGGGTGGGCTTTCTCGATCT
CATCAAACAGAACCACCGAGTAAGGTCTCCTGCGAACAACTTCAGTTAACTGCCCACCTTCTTC
ATAACCGACATAGCCAGGTGGTGCACCAACAAGCCGTGAGACTGAGTGTTTTTCCATGTACTCA
CTCATATCGACCCTCACTATTGCATTTTCAGTGTTAAAAAGGTATCCCGCTAGAGCCTTGGCAA
GCTCGGTCTTACCAACACCTGTTGGACCCATGAACATGAAACTAGCTATTGGGCGGTTAGGATC
AGAAAGACCAGCCCTTGAACGTCGGATAGCATCTGCTACTGATTTTACAGCCATGTCTTGACCA
ATAACTCTATGGTGGAGCACTTCTTCCAACATCACTAACTTCTCTCTCTCTGATTGCTGAAGAT
TAGATAGTGGAATACCAGTCCACTTGCTTACTATTTCTGCTATGTCAAGATCGGTAACCACTTC
TCGGAGTAGTGACTGTCCAAACTGTCGGAAATTCGTGAGATTCTTCTCAGCTTCTTCTAATTGG
CGTTGGAGGGACAAAAGTGTTCCATACTTCAGCTCAGCAGCTCGGTTTAGATCATATTCACGTT
CAGCAGATTCAATTTCGAGGTTAACTCGATCAATCTGTAAAACATAGAACATAGAAAATGTTAC
GGAGGACATTAACGTCGACATATACCAACAACGAAAGCAACCACCACAAGTACTACCACTAAAA
GTACGAATTTAGAACAAGAAACTGCAGTGTGTCTTGTATAAAATTATTTTTATGAGACGTTAAG
TCGAAAAGGCATAGTGATTGAGAAAGATTTTACCTCTTCCTTAAACGAACGTATTTTTGTCATG
AGCGACTTTTCTTTCTCCCATTGGACATTGAGTTCTTTCTGTTTCTGTTTGAGCGTGGACAGAT
CATTCTCAATCTTCTGTAGCCGTTCTTTAGATGCTTTATCAGTATCATTTTTAAGAGAAAGCTT
TTCCATCTCCAATTTGATCACAGCTCTATCTATTCCATCTAGTTCAGTTGGTTTAGAAGTGATC
TCCATCTTCAGCTTTGCACCAGCTTCGTCAACAAGATCAATAGCTGAAAAAAGAACATTCATCT
TAGAAAAAAATACTATGGTCAAACACTTCCCAAAGAAAACTGGTTGTAATCAGGGAAAGTGCAA
GTCCAATGTCCATACCTTTGTCTGGCAGAAAGCGTTCGGTGATGTAGCGGTCTGCAAGAACTGC
TGCTGAAACAAGGGCACTATCTGATATAGTAACGCCATGGTGTAACTCGTACCGCTCTCTTAAC
CCACGAAGAATCGAGATTGTATCTTCAACAGAGGGCTGAACACATAACACTTGTTGAAACCTAC
GCTCTAGAGCTGGGTCTTTCTCTATATATTTGCGGTATTCGGTCAGTGTAGTTGCACCAATGCA
TCTCAGTTCACCTCGTCCAAGCATTGGTTTCAAGAGGTTGCTTGCATCCATTGCTCCATCCATA
GCTCCTAAATAAGAGTAAATAGCAGCCAATTCGTTAGTTTCACCTTACCAATAACAAAGTACTA
AAGTGAGTCAAAAGAAACAAGATTAACAATATTAGTAGATCTTTCAATAAAATTTTCCATCTCC
AATTTAACCATTTATTTGGCGATGCAATGTTCTTCTACTCAGCCACATTTTAACCATTTATTAT
GCATATGTACATGTATCGTGTATAAAAAAGATCATCAATGTTTAAAGTATGTGGATAAAATGAA
AAAGGTACCTGCACCAACAACAGTGTGGATCTCATCAATAAACAAGATTGTTTGCCCATTGGAA
GCAGATACTTCCTTCATTACTGCTTTCAACCTCTCCTCAAAATCTCCTCGAAATTTGGCACCAG
CAAGAAGTGAACCCATGTCGAGAGATATCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.334525875
Functional Information
Coding potential Y
Potential coding position 10700450-10698260(-)
Potential amino acid sequence MGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGAGAMDGAMDASNLLKPMLGR
GELRCIGATTLTEYRKYIEKDPALERRFQQVLCVQPSVEDTISILRGLRERYELHHGVTISDSA
LVSAAVLADRYITERFLPDKAIDLVDEAGAKLKMEITSKPTELDGIDRAVIKLEMEKLSLKNDT
DKASKERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAEREYDLNR
AAELKYGTLLSLQRQLEEAEKNLTNFRQFGQSLLREVVTDLDIAEIVSKWTGIPLSNLQQSERE
KLVMLEEVLHHRVIGQDMAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGY
LFNTENAIVRVDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHPD
VFNILLQLLDDGRITDSQGRTVSFKNCVVIMTSNIGSHHILETLRNNEDSKEAVYEIMKRQVVE
LARQNFRPEFMNRIDEYIVFQPLDSNEISKIVELQLISLDMGSLLAGAKFRGDFEERLKAVMKE
VSASNGQTILFIDEIHTVVGAGAMDGAMDASNLLKPMLGRGELRCIGATTLTEYRKYIEKDPAL
ERRFQQVLCVQPSVEDTISILRGLRERYELHHGVTISDSALVSAAVLADRYITERFLPDKAIDL
VDEAGAKLKMEITSKPTELDGIDRAVIKLEMEKLSLKNDTDKASKERLQKIENDLSTLKQKQKE
LNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAEREYDLNRAAELKYGTLLSLQRQLEEAEKNLT
NFRQFGQSLLREVVTDLDIAEIVSKWTGIPLSNLQQSEREKLVMLEEVLHHRVIGQDMAVKSVA
DAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENAIVRVDMSEYMEKHSVSR
LVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHPDVFNILLQLLDDGRITDSQGRTVSF
KNCVVIMTSNIGSHHILETLRNNEDSKEAVYEIMKRQVVELARQNFRPEFMNRIDEYIVFQPLD
SNEISKIVELQLISLDMGSLLAGAKFRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGAGAM
DGAMDASNLLKPMLGRGELRCIGATTLTEYRKYIEKDPALERRFQQVLCVQPSVEDTISILRGL
RERYELHHGVTISDSALVSAAVLADRYITERFLPDKAIDLVDEAGAKLKMEITSKPTELDGIDR
AVIKLEMEKLSLKNDTDKASKERLQKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEIDR
VNLEIESAEREYDLNRAAELKYGTLLSLQRQLEEAEKNLTNFRQFGQSLLREVVTDLDIAEIVS
KWTGIPLSNLQQSEREKLVMLEEVLHHRVIGQDMAVKSVADAIRRSRAGLSDPNRPIASFMFMG
PTGVGKTELAKALAGYLFNTENAIVRVDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRR
PYSVVLFDEIEKAHPDVFNILLQLLDDGRITDSQGRTVSFKNCVVIMTSNIGSHHILETLRNNE
DSKEAVYEIMKRQVVELARQNFRPEFMNRIDEYIVFQPLDSNEISKIVELQLISLDMGSLLAGA
KFRGDFEERLKAVMKEVSASNGQTILFIDEIHTVVGAGAMDGAMDASNLLKPMLGRGELRCIGA
TTLTEYRKYIEKDPALERRFQQVLCVQPSVEDTISILRGLRERYELHHGVTISDSALVSAAVLA
DRYITERFLPDKAIDLVDEAGAKLKMEITSKPTELDGIDRAVIKLEMEKLSLKNDTDKASKERL
QKIENDLSTLKQKQKELNVQWEKEKSLMTKIRSFKEEIDRVNLEIESAEREYDLNRAAELKYGT
LLSLQRQLEEAEKNLTNFRQFGQSLLREVVTDLDIAEIVSKWTGIPLSNLQQSEREKLVMLEEV
LHHRVIGQDMAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALAGYLFNTENAI
VRVDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHPDVFNILLQL
LDDGRITDSQGRTVSFKNCVVIMTSNIGSHHILETLRNNEDSKEAVYEIMKRQVVELARQNFRP
EFMNRIDEYIVFQPLDSNEISKIVELQ(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Pan et al., 2017