Detail information of Os01g0534900_circ_g.20


General Information
CircRNA Name Os01g0534900_circ_g.20
ID in PlantcircBase osa_circ_002040
Alias Os_ciR2104
Organism Oryza sativa
Position chr1: 19399671-19403270  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0534900
Parent gene annotation Similar to Hv711N16.16 (Fragment). (Os01t0534900-01)
Parent gene strand -
Alternative splicing Os01g0534900_circ_g.2 Os01g0534900_circ_g.3 Os01g0534900_circ_g.4 Os01g0534900_circ_g.5 Os01g0534900_circ_g.6 Os01g0534900_circ_g.7 Os01g0534900_circ_g.8 Os01g0534900_circ_g.9 Os01g0534900_circ_g.10 Os01g0534900_circ_g.11 Os01g0534900_circ_g.12 Os01g0534900_circ_g.13 Os01g0534900_circ_g.14 Os01g0534900_circ_g.15 Os01g0534900_circ_g.16 Os01g0534900_circ_g.17 Os01g0534900_circ_g.18 Os01g0534900_circ_g.19 Os01g0534900_circ_g.21 Os01g0534900_circ_g.22 Os01g0534900_circ_g.23 Os01g0534900_circ_g.24 Os01g0534900_circ_g.25 Os01g0534900_circ_g.26 Os01g0534900_circ_g.27 Os01g0534900_circ_g.28 Os01g0534900_circ_g.29 Os01g0534900_circ_g.30 Os01g0534900_circ_g.31 Os01g0534900_circ_g.32 Os01g0534900_circ_g.33 Os01g0534900_circ_g.34 Os01g0534900_circ_g.35 Os01g0534900_circ_g.36 Os01g0534900_circ_g.37
Support reads 7/3
Tissues root/shoot, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os01t0534900-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATGGCACTCAGTATGTTGATAGCTGCAGAGACACCTATATCTTGAATAGTAGCCATATTTGTC
CTTCAAATAACTTGCGAGAATTACTACAGATGCTAGatttcaatcaaaggcttcagaaatggag
ctgccttctcaatcccttcaatatttgcaagggactgaacaaatgcaatcgggagcacataaaa
gaagttca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 305
Transcript exons: 19399671-19399786,19403048-19403148,19403183-19403270
ATTTCAATCAAAGGCTTCAGAAATGGAGCTGCCTTCTCAATCCCTTCAATATTTGCAAGGGACT
GAACAAATGCAATCGGGAGCACATAAAAGAAGTTCAGGAAGAAGAATGCAACCTTCCGCACAAA
TGCACCCCCATGACTTGGACTCTCTCTTGCACCTTTGAGATACCACTTTGGGAAGTAAACCCTA
TCGTTGATGGGCTGTAGTCGCAGGATATGTTGATAGCTGCAGAGACACCTATATCTTGAATAGT
AGCCATATTTGTCCTTCAAATAACTTGCGAGAATTACTACAGATGCTAG

Genomic sequence ATTTCAATCAAAGGCTTCAGAAATGGAGCTGCCTTCTCAATCCCTTCAATATTTGCAAGGGACT
GAACAAATGCAATCGGGAGCACATAAAAGAAGTTCAGGAAGAAGAATGCAACCGCAATTATCAG
CCTCCTAATTGTCAGGTAAACAAAAGGAATAGAGAGGTTATCCCAATAGACATCACGAGGTTCT
GGGGCCCACTCGGTCAACCAGACAGTTGGATTACTGGTTTGCTGTGTCTGAGCACACACTGCTG
CTCCCCACCGCGATCGGAAGGAAACAAAGGCTGCTGGCACAACTGATTTTGGATCCTTCATAAT
CTTTCCACGTTCATCAGTTTCCTAAATATCATTTATAAGAAGTTAATCCGGTGGTTTATGGTAC
TGGGGAAATCCTTTTAACATGTGAAACACAACATTCAACTTATACAGTGCTAATTACTAATAAA
AGCTAACACATATTTGCCAATATTGATGGATGCAAAGACAAGAAAGAAAGACACTATTTGCTTC
AGTAAAATAGCAAGAAGCTTTACTTTTGTTAAGACACTATATGAAGTCAACTGTAGTATTTTGA
AATAACACTAGACTCAAAGCAGAATAATGCATTAGGAGGCACAGCACAAAGATATTATGACTTA
CTTCCTTTTCTATCCTCTCAATTTCAGATGTGTAGTATTCAATAGCATCCACCTTTGAACCAAA
ACATCCAAGAAAACCAGTCTGGAAAAGAAGTATAGAAAAATAAGAAGAATAAATAAGGAATCAT
AAATAAAAATTATTCTTTTTTGTTTTGATAAAAACAACAAGAACTGTGTAAGAGAAGTAAAGAG
ATTAACATGATCAAATTTAGCAACAACCTTTGTAGTAGGCCTTTGAGATGTATTTCTTTCATAT
TTCAGCTGATAGTAATCAAGCCAATTCTGCATTTTCTTCTTCTCTTTGACCATCTTATCAAGCT
TATTTGCATTATAGACAACCTATACCAGTCCATGAAATGAATGATAAGAACATGGTAGTGGTAA
GCCATATCAGAGCATAGATTTTTTTTTTTTAGTAACGATAAGCAGTTAAAACTAAGGAATCAAA
CAGAACTACATTTGATTGCAGAAAGATAAAAAGGAAAGGCATATATGAAAGAAGTTAATGGCAT
ATAACTATTCACATGACTTCGCTATGAACTTTGAACTGACCAGACAGAAAGATCCAGTGAAGCA
TAAATACCAGACTGTAAAATATAAATATTACCTGGTGCGTAAGATAATGGTCAGGATGGTTTAC
AAGGAAGAAATGTTCCACAAGCTCACCAATTGATTCATCAGGATCAGGCGGTATATTCCGCACA
AGGACCTAAAAATCAACATTGGTCAATTAGTATATCATTGCTCTTCAGTCATAATCAGTTACAA
AATCTTCCTTCACCAGAGGCTTTCCAATTTTAAAGATGAGTTCTCCCACCAACCTATCTTGGTT
AGCCACATTCAGCTTAGTTAAATATCTGGATAGAACCAGGTACTTGCAAGTTCAAAAGTCACAT
TAAAAATTATACCCAGTTGGCAGTTGAAACTATTGGTGCCCTAACTAATTCGTCTTTTCTTTTG
GATAGAAATCCATTTCTTAGAGCATCTATAAGAATAAACAGTGCAAACATACCTAACAATTTTC
ATTTTACAGAATGAGCAGTATACAGCAAGCATTCAATAATGATACTTTTATGGTTTTGATGTCA
ACAACTCAATGTCCATAACATTTCAAGAATAGTGGTTTTCATGATTATCTTTTTTATCAGCTGA
TATTTTACATTATTCAAGTTCCCACGTAGTCCCTCAATCACTATCCATGAGGTGAAGCTTTTTT
GTCTTCCATAGATGTGTAAAAAGACTTAAGTGGCATTATTAGATTCATTGTGAAATGAACACTG
TTAGTGACATGACATGCTATGAACTAAGTAGAATTGGAAGGCACATTAGAAAGAAAATATCAAG
TAATATAAATTGAACTGCCAAATGCATAGAGTTCACAAGATCATACCGTGAACTGATCTGGGCG
GCGCTTCTCTGATGCAAGAAAGCGCAGACGCATTGTTGCCACTATTTCATACTCCCGTAACAGC
ACATAGCATGTCCAAAATGTGAAAACATAAGCCATGGTCAGGTGAGCTGCGAACCTGCATTAAA
AAAAAGTCACAGGCATAGTGAACACTAAAACAATAGTTTCAGAGTTGATGAACAGGGTATCCTG
CAAGACTAATGTGCTGCCTGGAAGGCTAATATCAACTATAACCACTCACCTACTTATCTATGGC
AAGATCAAACCTTTGCGACTATTTGTCTAATTACTATTACAAAGTATCACACCAAACTGACACA
ACAAGCTAGGTTAAAATTAATGGCCTTCAGAATTGCACACCCCACACATGCAAGCTACTACCGT
TTCTGACTCCCAGCTCATGTATTATCACAGAGGCTGGGTGGTTGTTCATACTGCATGGTCATCT
CTATACATCTTCGGATCTTCATGACTTTCCTAAGCCCAAATGGGGAAAGAAAGTAAGAGCAATC
ATCATTCCACTTACCATTTGAACCAACCCCATACTCACTATCTTAAATTGTGTTTGAAGTAATC
TATCAGGCATGCCCATATTTTAGCCAAAGATGGTACACAACATTAACAGTAATATGTAGGTATA
TTACTATATTTTAAGACAGAAAAATTATCTGGTACTAACCTCTTTGACCCTACAGGTATGTTGG
ATATTGAAAGTTTGTCAATATCACTGTGCTGCACCTTCGAGCTTTGAAGGGTAATATTGGTCCA
ATTAACAGGCACAAGAATAATAAATGCTAGAACTGTGATTGGAGCAAATATTTTAAGCCTGCAA
CAGTTAATAGTAAAGGAGATTAGTGTAAAAGTATTGGCAGAGAAAAGTAACAGAGATGGGAGAT
ACCCAGTGGATAAAACAGAAACATTCAACAAAACAACATTTTCGGTACTAGAAGTACACTTCTA
CATATGTAAGAAATGGAGAAATAGCAACGATTTAGAATCCATAAAAATATAAGACAATTAAAAT
GAATAGTATGTAAATATTAAAATATGGTCCAACACTAGAGCCCTTCCCTTCTGTCAAGGAGAAA
ACCTGAAAGCTAAACCCCCCCCCCCCCCTCCCTTAAATATATGTCTGACCTAAAGTATAATTGA
CGACTTAAAAAGTTAGCAGAATTTATGAATATAAATTGCATACCCTATTAAGTAGATCCGCAGA
TAGACAGCTGAATCAAGGCCTGCATGGCTAATTAACTCATCCTCTGGCATTTTGAGAGCAGCAG
GCATCCAACTTAAGACCTTCAAGTATGATCGCATGTCCAAATTGACAAACTTCCGCACAAATGC
ACCCCCATGACTTGGACTCTCTCTTGCACCTTTGAGATACCACTTTGGGAAGTAAACCCTATCG
TTGATGGGCTGTAGTCGCAGGAAAGCAAACGCTAGCAGGAAAGTGATGGCACTCAGTATGTTGA
TAGCTGCAGAGACACCTATATCTTGAATAGTAGCCATATTTGTCCTTCAAATAACTTGCGAGAA
TTACTACAGATGCTAG
Conservation Information
Conserved circRNAs osi_circ_009877
PMCS 0.345462278
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017