Plant Circular RNA Database

Detail information of Os05g0163700_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os05g0163700_circ_g.1
					
						ID in PlantcircBase
						osa_circ_026773
					
						Alias
						Os_ciR1692
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 3731547-3733728  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, PcircRNA_finder, find_circ
					
						Parent gene
						
							Os05g0163700						
					
						Parent gene annotation
						
							Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (
AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG
6). (Os05t0163700-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os05g0163700_circ_g.2 Os05g0163700_circ_g.3 						
					
						Support reads
						6/2
					
						Tissues
						root/shoot, root, anther, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0163700-01:10

General Information
CircRNA Name	Os05g0163700_circ_g.1
ID in PlantcircBase	osa_circ_026773
Alias	Os_ciR1692
Organism	Oryza sativa
Position	chr5: 3731547-3733728 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer, PcircRNA_finder, find_circ
Parent gene	Os05g0163700
Parent gene annotation	Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) ( AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG 6). (Os05t0163700-01)
Parent gene strand	-
Alternative splicing	Os05g0163700_circ_g.2 Os05g0163700_circ_g.3
Support reads	6/2
Tissues	root/shoot, root, anther, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0163700-01:10

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATAATGGGTGCAATTTCTCTCTCCATAATACCACGGACTTTCTTCCTAAGTGTCTTCTCTTCAT
CAGTAAGCAAATCATCAAACTGGTAGTAATCCGATActttgctaccagaaagtcagccaaaatt
ccgtttccacccagtagctcacggccaagagaaaccacctccctagccttcttggatgtccatg
cctggatt

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1055
Transcript exons: 3731547-3731639,3731761-3731932,3732021-3732097,3732214-
3732373,3732499-3732608,3732716-3732775,3732887-3732960,
3733072-3733195,3733317-3733394,3733622-3733728
CTTTGCTACCAGAAAGTCAGCCAAAATTCCGTTTCCACCCAGTAGCTCACGGCCAAGAGAAACC
ACCTCCCTAGCCTTCTTGGATGTCCATGCCTTGCCTAAACTAGCATGGCCTGGTGTCATTTTGC
CTGATTCATACAGCTTGCACAGGCGCCAGCCGACAAGAAGCATGGCTTGGATGTTTCCTAGCAT
GCGAACAAGCTTTTCTTGGTTGAGCTGAAAAGCTGCCAACGGAACTCCAAATTGCTTTCTTTCT
TTCAAATACCGATGACACATGTCGAAGACCCCCATGGATATCCCAATTGGCTGCCATGCCACCA
TAATGCGCGACATAGCAAGGACCTTGTTTATGTCTTGAAATGAATTGATTCCAGTTAATCTATC
TTCGTCAGGGACAAATACTTTATTCAGAACAATGTCGGCATTCTGAACCATTCTGAGTCCAATT
TTATTTTCAATTTTTGTACATTTCAAACCAGGAGCTCCTTTCTTGACAATAAATCCATTTAGTT
GATTTGTATCTGAATTTCTAGCTAAGATGATGAGCACATCTGCAAAAGTGCCGTTGCCTATCCA
ACGCTTTTGGCCATCCAAATGCCAACCGCCAGGCACCTTGGTCGCTGCAGTCCTTAATGAACTT
GCATCACTTCCATAATCTGGCTCTGTCAATGCCCAGCAACCAATTGTTCTAAACTGCGTTAATG
ATGGTAAGTACTTCTGCTTTTGAGCCTCTGATCCACAAAGTGCAATTGTGCTCATTGCCAAAGA
GGAATGTACTAAAATAAATGTGGAGCAGCTGGCATCCACCCGTGCAACTTCTGCAACAGAAATA
GCACTAGCTGTAAGTGAGAGTCCTGGGCAACCATATCCCTTTGTTGTCCCTCCTGCCAAGCCAA
GAGTTGCAAGTTTGGGAATGGCATGGAAGGGAAATTCTGCTTTCTCCCAGTACTCTGTCATAAT
GGGTGCAATTTCTCTCTCCATAATACCACGGACTTTCTTCCTAAGTGTCTTCTCTTCATCAGTA
AGCAAATCATCAAACTGGTAGTAATCCGATA
						
					

						Genomic sequence
						
							CTTTGCTACCAGAAAGTCAGCCAAAATTCCGTTTCCACCCAGTAGCTCACGGCCAAGAGAAACC
ACCTCCCTAGCCTTCTTGGATGTCCATGCCTGGATTCAAGTATTATCAGTGAGATGTTGAAGAA
AGCAAGCGAAAAGTAAATCAAACCGAACAGCGCACAATCATAAGGTGGATGCCATTTTTCTAAG
TGCATTGTGATTTTGTACAAACCTTGCCTAAACTAGCATGGCCTGGTGTCATTTTGCCTGATTC
ATACAGCTTGCACAGGCGCCAGCCGACAAGAAGCATGGCTTGGATGTTTCCTAGCATGCGAACA
AGCTTTTCTTGGTTGAGCTGAAAAGCTGCCAACGGAACTCCAAATTGCTTTCTTTCTTTCAAAT
ACCTATCCAATGGTAAATAATAAAGTCAATACATATTAGGTGGTACCAATTTGAAACTAGTAAA
GACTGAACTAAGAAGGTGATTCGCACCGATGACACATGTCGAAGACCCCCATGGATATCCCAAT
TGGCTGCCATGCCACCATAATGCGCGACATAGCAAGGACCTGATCCGGTAGTTAAAGTTTCAGC
AAGTAAAAATCAGGTTAGTGCACATGGCAGTGTATTCAAATTGACTGACACAGAGTAGGATTAG
CGCAATCAAAAGAGATGTCTTTGTTACCTTGTTTATGTCTTGAAATGAATTGATTCCAGTTAAT
CTATCTTCGTCAGGGACAAATACTTTATTCAGAACAATGTCGGCATTCTGAACCATTCTGAGTC
CAATTTTATTTTCAATTTTTGTACATTTCAAACCAGGAGCTCCTTTCTTGACAATAAATCTAGA
GGAAGTTTGCCATATCAATTATGAGTGGTCACATTCATGGGCATAGAAATGAGTTCGAATTAAC
ATGTGTACAGTGGTAGACAAAATGATATCAACAATAGTCCAGCGGAAGATGATTACCCATTTAG
TTGATTTGTATCTGAATTTCTAGCTAAGATGATGAGCACATCTGCAAAAGTGCCGTTGCCTATC
CAACGCTTTTGGCCATCCAAATGCCAACCGCCAGGCACCTACCAAGGTAAAAACCAACATGACA
ACATTGTAAGGTTGTGCAGAAACATTCAGATATTTTTCTTTACTTAGAAGTTAAAATTTTCATG
ATATCTATGTTTCAAACCTTGGTCGCTGCAGTCCTTAATGAACTTGCATCACTTCCATAATCTG
GCTCTGTCAATGCCTACAGCAAGAAGACCCATTCTTCTTAAGATGACAATATGTAAAACAGCAT
GTTGAATACTATAATAAAAGCTACAAAGGCTAACCACATAAATAGGAGAATGCAACTCACCCAG
CAACCAATTGTTCTAAACTGCGTTAATGATGGTAAGTACTTCTGCTTTTGAGCCTCTGATCCAC
AAAGTGCTATTTGCACAGAAAATTGAAAGGACAAAAATAGTGAGCTCAGAAAATAGTTGTCTTG
GTCAGTCTATAACACATTTCAAACAAAATCATCTGAATAAGTTATAGCTTTACCAATTGTGCTC
ATTGCCAAAGAGGAATGTACTAAAATAAATGTGGAGCAGCTGGCATCCACCCGTGCAACTTCTG
CAACAGAAATAGCACTAGCTGTAAGTGAGAGTCCTGGGCAACCATATCCCTGTAACGCCAAGAT
AAATTCAAGGAAAAGGATCAAATTTCAATGAGACAACGAGCGTACTGGTGAAATTTTACAGTCA
AATGTAAAACATAAGTACTAGATGATTTAGTATTTTATATACCTTTGTTGTCCCTCCTGCCAAG
CCAAGAGTTGCAAGTTTGGGAATGGCATGGAAGGGAAATTCTGCTTTCTCCCAGTACTGCATAT
GTAAAAAGCCCATAGGGGTTTATAGTTATGACATGATACACATCGAGCAGGCAACTGTCACTGT
AACACAACAGCTAGTCAACCCAAGGGAGAGTTACCATCCAGCGACGACAAGAAAAAAATGTACT
AGTCCTAGAAGATATACCATATATATGTTTTGCAAAAAAAAAAAAGAAGCAGGGGATTAACAAA
TGAAAACTATGTATAGCAACAACATACCTCTGTCATAATGGGTGCAATTTCTCTCTCCATAATA
CCACGGACTTTCTTCCTAAGTGTCTTCTCTTCATCAGTAAGCAAATCATCAAACTGGTAGTAAT
CCGATA
						
					

			
		

Sequences
Splice junction sequence	ATAATGGGTGCAATTTCTCTCTCCATAATACCACGGACTTTCTTCCTAAGTGTCTTCTCTTCAT CAGTAAGCAAATCATCAAACTGGTAGTAATCCGATActttgctaccagaaagtcagccaaaatt ccgtttccacccagtagctcacggccaagagaaaccacctccctagccttcttggatgtccatg cctggatt
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1055 Transcript exons: 3731547-3731639,3731761-3731932,3732021-3732097,3732214- 3732373,3732499-3732608,3732716-3732775,3732887-3732960, 3733072-3733195,3733317-3733394,3733622-3733728 CTTTGCTACCAGAAAGTCAGCCAAAATTCCGTTTCCACCCAGTAGCTCACGGCCAAGAGAAACC ACCTCCCTAGCCTTCTTGGATGTCCATGCCTTGCCTAAACTAGCATGGCCTGGTGTCATTTTGC CTGATTCATACAGCTTGCACAGGCGCCAGCCGACAAGAAGCATGGCTTGGATGTTTCCTAGCAT GCGAACAAGCTTTTCTTGGTTGAGCTGAAAAGCTGCCAACGGAACTCCAAATTGCTTTCTTTCT TTCAAATACCGATGACACATGTCGAAGACCCCCATGGATATCCCAATTGGCTGCCATGCCACCA TAATGCGCGACATAGCAAGGACCTTGTTTATGTCTTGAAATGAATTGATTCCAGTTAATCTATC TTCGTCAGGGACAAATACTTTATTCAGAACAATGTCGGCATTCTGAACCATTCTGAGTCCAATT TTATTTTCAATTTTTGTACATTTCAAACCAGGAGCTCCTTTCTTGACAATAAATCCATTTAGTT GATTTGTATCTGAATTTCTAGCTAAGATGATGAGCACATCTGCAAAAGTGCCGTTGCCTATCCA ACGCTTTTGGCCATCCAAATGCCAACCGCCAGGCACCTTGGTCGCTGCAGTCCTTAATGAACTT GCATCACTTCCATAATCTGGCTCTGTCAATGCCCAGCAACCAATTGTTCTAAACTGCGTTAATG ATGGTAAGTACTTCTGCTTTTGAGCCTCTGATCCACAAAGTGCAATTGTGCTCATTGCCAAAGA GGAATGTACTAAAATAAATGTGGAGCAGCTGGCATCCACCCGTGCAACTTCTGCAACAGAAATA GCACTAGCTGTAAGTGAGAGTCCTGGGCAACCATATCCCTTTGTTGTCCCTCCTGCCAAGCCAA GAGTTGCAAGTTTGGGAATGGCATGGAAGGGAAATTCTGCTTTCTCCCAGTACTCTGTCATAAT GGGTGCAATTTCTCTCTCCATAATACCACGGACTTTCTTCCTAAGTGTCTTCTCTTCATCAGTA AGCAAATCATCAAACTGGTAGTAATCCGATA
Genomic sequence	CTTTGCTACCAGAAAGTCAGCCAAAATTCCGTTTCCACCCAGTAGCTCACGGCCAAGAGAAACC ACCTCCCTAGCCTTCTTGGATGTCCATGCCTGGATTCAAGTATTATCAGTGAGATGTTGAAGAA AGCAAGCGAAAAGTAAATCAAACCGAACAGCGCACAATCATAAGGTGGATGCCATTTTTCTAAG TGCATTGTGATTTTGTACAAACCTTGCCTAAACTAGCATGGCCTGGTGTCATTTTGCCTGATTC ATACAGCTTGCACAGGCGCCAGCCGACAAGAAGCATGGCTTGGATGTTTCCTAGCATGCGAACA AGCTTTTCTTGGTTGAGCTGAAAAGCTGCCAACGGAACTCCAAATTGCTTTCTTTCTTTCAAAT ACCTATCCAATGGTAAATAATAAAGTCAATACATATTAGGTGGTACCAATTTGAAACTAGTAAA GACTGAACTAAGAAGGTGATTCGCACCGATGACACATGTCGAAGACCCCCATGGATATCCCAAT TGGCTGCCATGCCACCATAATGCGCGACATAGCAAGGACCTGATCCGGTAGTTAAAGTTTCAGC AAGTAAAAATCAGGTTAGTGCACATGGCAGTGTATTCAAATTGACTGACACAGAGTAGGATTAG CGCAATCAAAAGAGATGTCTTTGTTACCTTGTTTATGTCTTGAAATGAATTGATTCCAGTTAAT CTATCTTCGTCAGGGACAAATACTTTATTCAGAACAATGTCGGCATTCTGAACCATTCTGAGTC CAATTTTATTTTCAATTTTTGTACATTTCAAACCAGGAGCTCCTTTCTTGACAATAAATCTAGA GGAAGTTTGCCATATCAATTATGAGTGGTCACATTCATGGGCATAGAAATGAGTTCGAATTAAC ATGTGTACAGTGGTAGACAAAATGATATCAACAATAGTCCAGCGGAAGATGATTACCCATTTAG TTGATTTGTATCTGAATTTCTAGCTAAGATGATGAGCACATCTGCAAAAGTGCCGTTGCCTATC CAACGCTTTTGGCCATCCAAATGCCAACCGCCAGGCACCTACCAAGGTAAAAACCAACATGACA ACATTGTAAGGTTGTGCAGAAACATTCAGATATTTTTCTTTACTTAGAAGTTAAAATTTTCATG ATATCTATGTTTCAAACCTTGGTCGCTGCAGTCCTTAATGAACTTGCATCACTTCCATAATCTG GCTCTGTCAATGCCTACAGCAAGAAGACCCATTCTTCTTAAGATGACAATATGTAAAACAGCAT GTTGAATACTATAATAAAAGCTACAAAGGCTAACCACATAAATAGGAGAATGCAACTCACCCAG CAACCAATTGTTCTAAACTGCGTTAATGATGGTAAGTACTTCTGCTTTTGAGCCTCTGATCCAC AAAGTGCTATTTGCACAGAAAATTGAAAGGACAAAAATAGTGAGCTCAGAAAATAGTTGTCTTG GTCAGTCTATAACACATTTCAAACAAAATCATCTGAATAAGTTATAGCTTTACCAATTGTGCTC ATTGCCAAAGAGGAATGTACTAAAATAAATGTGGAGCAGCTGGCATCCACCCGTGCAACTTCTG CAACAGAAATAGCACTAGCTGTAAGTGAGAGTCCTGGGCAACCATATCCCTGTAACGCCAAGAT AAATTCAAGGAAAAGGATCAAATTTCAATGAGACAACGAGCGTACTGGTGAAATTTTACAGTCA AATGTAAAACATAAGTACTAGATGATTTAGTATTTTATATACCTTTGTTGTCCCTCCTGCCAAG CCAAGAGTTGCAAGTTTGGGAATGGCATGGAAGGGAAATTCTGCTTTCTCCCAGTACTGCATAT GTAAAAAGCCCATAGGGGTTTATAGTTATGACATGATACACATCGAGCAGGCAACTGTCACTGT AACACAACAGCTAGTCAACCCAAGGGAGAGTTACCATCCAGCGACGACAAGAAAAAAATGTACT AGTCCTAGAAGATATACCATATATATGTTTTGCAAAAAAAAAAAAGAAGCAGGGGATTAACAAA TGAAAACTATGTATAGCAACAACATACCTCTGTCATAATGGGTGCAATTTCTCTCTCCATAATA CCACGGACTTTCTTCCTAAGTGTCTTCTCTTCATCAGTAAGCAAATCATCAAACTGGTAGTAAT CCGATA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_005991* 						
					
						PMCS
						0.257681565

Conservation Information
Conserved circRNAs	osi_circ_005991*
PMCS	0.257681565

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							3733366-3731884(+)
3733656-3733629(-)
						
						Potential amino acid sequence
						
							MEGKFCFLPVLCHNGCNFSLHNTTDFLPKCLLFISKQIIKLVVIRYFATRKSAKIPFPPSSSRP
RETTSLAFLDVHALPKLAWPGVILPDSYSLHRRQPTRSMAWMFPSMRTSFSWLS*(+)
MEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGGTTKGYGCPGLSLTASAISVAEVARVDASCS
TFILVHSSLAMSTIALCGSEAQKQKYLPSLTQFRTIGCWALTEPDYGSDASSLRTAATKVPGGW
HLDGQKRWIGNGTFADVLIILARNSDTNQLNGFIVKKGAPGLKCTKIENKIGLRMVQNADIVLN
KVFVPDEDRLTGINSFQDINKVLAMSRIMVAWQPIGISMGVFDMCHRYLKERKQFGVPLAAFQL
NQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGIL
ADFLVAKYRITTSLMICLLMKRRHLGRKSVVLWREKLHPL*(-)
						
						Sponge-miRNAs
						
							osa-miR5147 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	3733366-3731884(+) 3733656-3733629(-)
Potential amino acid sequence	MEGKFCFLPVLCHNGCNFSLHNTTDFLPKCLLFISKQIIKLVVIRYFATRKSAKIPFPPSSSRP RETTSLAFLDVHALPKLAWPGVILPDSYSLHRRQPTRSMAWMFPSMRTSFSWLS(+) MEREIAPIMTEYWEKAEFPFHAIPKLATLGLAGGTTKGYGCPGLSLTASAISVAEVARVDASCS TFILVHSSLAMSTIALCGSEAQKQKYLPSLTQFRTIGCWALTEPDYGSDASSLRTAATKVPGGW HLDGQKRWIGNGTFADVLIILARNSDTNQLNGFIVKKGAPGLKCTKIENKIGLRMVQNADIVLN KVFVPDEDRLTGINSFQDINKVLAMSRIMVAWQPIGISMGVFDMCHRYLKERKQFGVPLAAFQL NQEKLVRMLGNIQAMLLVGWRLCKLYESGKMTPGHASLGKAWTSKKAREVVSLGRELLGGNGIL ADFLVAKYRITTSLMICLLMKRRHLGRKSVVLWREKLHPL(-)
Sponge-miRNAs	osa-miR5147
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015;Chu et al., 2017

circRNA

Detail information of Os05g0163700_circ_g.1

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