Detail information of Niben101Scf02268g06007_circ_g.1


General Information
CircRNA Name Niben101Scf02268g06007_circ_g.1
ID in PlantcircBase nbe_circ_000918
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf02268: 544365-549039  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   ei-circRNA
Identification method DCC
Parent gene Niben101Scf02268g06007
Parent gene annotation NA
Parent gene strand -
Alternative splicing Niben101Scf02268g06007_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-CG
Number of exons covered Niben101Scf02268g06007.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTACTTGGAGGCCTATTTGGAGGCTCTGGAGCAATCCGGAACTTCTGATAGTTTTTAAGAATTT
CGCAAATTTCAGCAGGGCGTAGCCATCTATGTTGTGttctaaagcatctaatcacctagatcat
gcaaaatatcgaaagcaaaaaagttaagccaaatatcatatagaagcaacacccatcaagcata
ataacaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCTAAAGCATCTAATCACCTAGATCATGCAAAATATCGAAAGCAAAAAAGTTAAGCCAAATAT
CATATAGAAGCAACACCCATCAAGCATAATAACAAATAATTTTACAGTGCCATAACAATATTCC
TATTATTATAGGGATGAACAAGCTAAACTCCTACCAACCTAACTTTCAATTAGCATGTAAATGT
TAATTAAAGATGTCTAACTAATTGTTCGACATGAATAAAAGTCTGGATTGACTTTTAGCTCCAA
GGTTAGAGCAATACACCTATAATAGCATATCTGTGTGCTAAAACTAATATTATATCTTTTCACT
TACTCTTCGAGCATCCAATAGCTGCGTCTTTGGAAATGCTCATTCTCTTCTCCATGGGCATAGT
AGCAGTGCAATACATCAATGCTTCCGGCCTGTAAGAACATTAATTTCTGATCAGCTTCTTAATA
CAAGAACAAAGCCCTCATAGAATGATAATTCCATGAATGTCTAACATTCGAATTAAGTACAACA
TACGCCTCAATCCCAAACTAACATTTTCAAATCAAGGACATATAACTTTAATAAGCTTCTGCAC
AATCATAAGGTTCCCATTAGTTTTACCTTGAGCCTCTCGTGAGCCTCCTTCACAGTCTTCCCAT
CTTTTTTCTTTCTCCAGCTATGGCCATCTTTGCGAAAATACCGTAAAACCTTCCGATCAAAAAG
AAACAGTGAACCACCTGGAAGGGCCATACAAGTCAATTTAAAAGGTGTAAAAATACAATAAAAA
CACTGTGGATTCCAGGAATAGCTACATATTCTTGAAAGCTCTACAAACATAAAAATGCCATATA
CGAGCTGGTGAAGAAACTGCGAAAACAAGTTTAATGAAGAAATGTAAACTTCTTTATCATTATC
ATGCCATCAGTTAATTAATAGGCGGTTCTCAAGCAGATTAATCCTGATAATTACAGATCATCAC
ATCAGATTTAGGCTTAGCAGCTTGCAAACATTTACCATCATCCAGTAAATAGACTCAAGAACTC
CTAAAAGCAAGGAAAAGAGTACGTAGAGGATANCCACCTTGCTCTTGGGGAGACTCGAACTCAC
AACCTCTCGGTTGGAAGTGGGGGTTGCTTAAATACACAAGATATAAATACTTAAAATAAATTAA
TAAGTGTCCCCTATCTAACCATTTAAGCTTTCAGACGAGAAAGTTCATACCATTCAACATGGCA
TTAGAGTAAGCAAAAATCCTGGATCGAGTCTCACCACCGTCCATTAATAAAGACATTTGTGAAA
GGACTTAAAAATATACAAATAAATGTCTCCCTCTCTAACGTTTTGAACTTTTCAATAAGGAGTA
CATGCTATTCAACAACGATATGATTATTTGGTCTTAGATGCAAAGTGTGCACAAAATACCCTTT
AATAGATTAATCATCCATCATGCGTCAACCTTTACAATGACCCCTCAACGTTCTAAAGCATCTA
ATCACCTAGATCATGCAAAATATCGAAAGCAAAAAAGTTAAGCCAAATATCATATAGAAGCAAC
ACCCATCAAGCATAATAACAAATAATTTTACAGTGCCATAACAATATTCCTATTATTATAGGGA
TGAACAAGCTAAACTCCTACCAACCTAACTTTCAATTAGCATGTAAATGTTAATTAAAGATGTC
TAACTAATTGTTCGACATGAATAAAAGTCTGGATTGACTTTTAGCTCCAAGGTTAGAGCAATAC
ACCTATAATAGCATATCTGTGTGCTAAAACTAATATTATATCTTTTCACTTACTCTTCGAGCAT
CCAATAGCTGCGTCTTTGGAAATGCTCATTCTCTTCTCCATGGGCATAGTAGCAGTGCAATACA
TCAATGCTTCCGGCCTGTAAGAACATTAATTTCTGATCAGCTTCTTAATACAAGAACAAAGCCC
TCATAGAATGATAATTCCATGAATGTCTAACATTCGAATTAAGTACAACATACGCCTCAATCCC
AAACTAACATTTTCAAATCAAGGACATATAACTTTAATAAGCTTCTGCACAATCATAAGGTTCC
CATTAGTTTTACCTTGAGCCTCTCGTGAGCCTCCTTCACAGTCTTCCCATCTTTTTTCTTTCTC
CAGCTATGGCCATCTTTGCGAAAATACCGTAAAACCTTCCGATCAAAAAGAAACAGTGAACCAC
CTGGAAGGGCCATACAAGTCAATTTAAAAGGTGTAAAAATACAATAAAAACACTGTGGATTCCA
GGAATAGCTACATATTCTTGAAAGCTCTACAAACATAAAAATGCCATATACGAGCTGGTGAAGA
AACTGCGAAAACAAGTTTAATGAAGAAATGTAAACTTCTTTATCATTATCATGCCATCAGTTAA
TTAATAGGCGGTTCTCAAGCAGATTAATCCTGATAATTACAGATCATCACATCAGATTTAGGCT
TAGCAGCTTGCAAACATTTACCATCATCCAGTAAATAGACTCAAGAACTCCTAAAAGCAAGGAA
AAGAGTACGTAGAGGATAATCTTGATTACATAAGATGATGGTACTTACACATACGTGAGACAAA
ATAACAGTCTTAGAACCAACTGGCAGGCCCATGAGTTACTGATATTCGGCTAAAAGTTCATATA
TTTAGTGCATTTCCACCTCATATCTTGTGAATATTTGTTGTGGTTTAAACAATTATTGGTGTAT
TTTGAGCTCATTACGTGCTTTATATGTGTAGGAGTAATTTTGGATTAAAGCAGCATACAAAGGG
AGTTTTTCGGCACAAATAGGAGTTGAAGGCATAAGAGAAAATAAGCTTAAAAGGAGACGTCAGC
CTGGCTCGCCTCGCAGGCCTAGCCTCCAAATGTGTTGAGAGATCCTGCAATCCAGTGAAGCGAA
GCCATCGTGAGCCCCTTTGCCAGACCTGCTTAAAAGAAAGCCTGGAGGTGAACATCAAGGTTCT
CGTGTTGCGGGCACAGAAGACGTGCGTTCCAGGTTTTCCAATTTGAGTTGAGATTGGACCAAAA
CGTCTTCTACACCTATAAATGCACCCGAAACTCTATTTCTACACCACTTTTGACCGAGGGAGGG
TAAGAACGGCTGTGGAGCTTCAAGTTCATCTTTTCTTCTGCCAAAACCCGAAGTCTTATGTTTC
TTGGGATGATTTTTCGTTTGGTTACCATGTCTATGTGGAGCTATACTTCACTCAGGGAGGAAAT
TCCAAATAACACATAGGATTGAGTAGAGCAAGTTTCTGAACCCGGCCTCAATGAATGATTTTGC
AATTAGGATAGGGATATACCATAACAGTCTTAGTCATGATACAAGAATTACAAAGGCGTTCTTG
TTAACTCTAATTTCATAGGAACATAGTCGCAAGCTTGACTTGAACAGACGAGTGGGACATCGGA
GATTCCAGTAAGTAATATAAACCTTGTGATAATAAACTAGATAGATTGAGAAGTTAACTCAGTT
GAAGAATATGATAGGATTGTTAGATAATCCATAATCCTAGATTGTTTTCATCACATTGATAACA
TAAGAATCTGCTATTCTTTTGTCTAGAATCCATTCTTTATTTTCTTTTTTCTTTTTTTGTTTTA
GTTAGTTTGGATTCAAGCTCTTTTGGTTTTAATTCTTGTTCGATAATTAGGATCCTTTAATCTA
GTGATAGTTGATAACGAGTCTTCGTGGGAATGATAATCTATTCACTATTTTATTACTGGTCGAC
CGTGTATACTTGCGTGTGCGCTTGGCAACAACAATTACTACACAAGGAGGTGGAAGGGCGTTGA
GTTTAGGCTTTATGCCAGAAGAACATGTCCTTTTTACCGATGGTGATCTGAAGAAAACTAATTA
GATAAAACAAGCCGTAAAGCATCCAACAATAGGTCTAAATAAGGGGGCAACACATGAGTGAAAT
AAAGCTATACACAGGAAACACTATGCATAAAAAGACTACACATTGAAATCTAGTAAATGGAGCT
AAAAATGATGTCAACAAGTATTTTAAACATACTTTTAACAAATAGCCTCTATCTGAGAGTAGGA
AGGAGGAAGAGTGAACTAGAGGAGAAAAACGCCGAGCATGTCTCTCAGGCACACACAGAGACAC
GCATATGTGACATAACTACATTTCCTCCCAGACACATCCACATAGATATAGATAGTAGCAGACT
GGATAATGCACCATCAAGAGAGAGCGTGTAGCAACAACAACAACAACAACTACCCAGTATAGTC
CCACAAAGTGGGGTCTGGGGAGGGTAATATGTAGACGATCCTTACCCCTACCCGGAAGGGCAGA
GAGGCTGTTTCCAATCGACCCTCGGCCCAGTGAAGAAAAGGAAAAACAAAAACAAAACAAAAAC
AAAAGAGCATTAGTAACTCCAGCAGAAATAGCATAAATAATTATCTAAACATAAGAAATATAAA
TAAAATAGCATGCAATAATATCATACAGTAACTACCATAAATAACTACCATAAGGGAGACACAA
TCCATAAGAGAGCGTGTAGCAAGAGAAAAGAAAAACTCTACCCAGAAACTACACGGATCACATT
TTAAGAGAAAAAAGATATTCAGCTAATGATCTTACTTGGAGGCCTATTTGGAGGCTCTGGAGCA
ATCCGGAACTTCTGATAGTTTTTAAGAATTTCGCAAATTTCAGCAGGGCGTAGCCATCTATGTT
GTG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019