Plant Circular RNA Database

Detail information of AT4G32640_circ_g.12

			
						 General Information
					
						CircRNA Name
						AT4G32640_circ_g.12
					
						ID in PlantcircBase
						ath_circ_034133
					
						Alias
						4:15745043-15747925
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr4: 15745043-15747925  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ; CIRI2
					
						Parent gene
						
							AT4G32640						
					
						Parent gene annotation
						
							Protein transport protein Sec24-like At4g32640
							
						Parent gene strand
						+
					
						Alternative splicing
						
							AT4G32470_circ_g.1 AT4G32470_circ_g.2 AT4G32470_circ_g.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 AT4G32480_circ_g.1 AT4G32510_circ_g.1 AT4G32520_circ_g.1 AT4G32520_circ_g.2 AT4G32530_circ_g.1 AT4G32551_circ_g.1 AT4G32551_circ_g.2 AT4G32551_circ_g.3 AT4G32551_circ_g.4 AT4G32551_circ_g.5 AT4G32551_circ_g.6 AT4G32551_circ_g.7 AT4G32551_circ_g.8 AT4G32551_circ_g.9 AT4G32551_circ_g.10 AT4G32551_circ_g.11 AT4G32551_circ_g.12 AT4G32551_circ_g.13 AT4G32551_circ_g.14 AT4G32551_circ_g.15 AT4G32551_circ_g.16 AT4G32560_circ_g.1 AT4G32570_circ_g.1 AT4G32570_circ_g.2 AT4G32570_circ_g.3 AT4G32590_circ_g.1 AT4G32590_circ_g.2 AT4G32590_circ_g.3 AT4G32610_circ_g.1 AT4G32610_circ_g.2 AT4G32620_circ_g.1 AT4G32620_circ_g.2 AT4G32630_circ_g.1 AT4G32640_circ_g.1 AT4G32640_circ_g.2 AT4G32640_circ_g.3 AT4G32640_circ_g.4 AT4G32640_circ_g.5 AT4G32640_circ_g.6 AT4G32640_circ_g.7 AT4G32640_circ_g.8 AT4G32640_circ_g.9 AT4G32640_circ_g.10 AT4G32640_circ_g.11 AT4G32640_circ_g.13 AT4G32640_circ_g.14 AT4G32640_circ_g.15 AT4G32640_circ_g.16 AT4G32640_circ_g.17 AT4G32640_circ_g.18 AT4G32640_circ_g.19 AT4G32640_circ_g.20 AT4G32640_circ_g.21 AT4G32640_circ_g.22 AT4G32650_circ_g.1 						
					
						Support reads
						3
					
						Tissues
						flower
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT4G32640.1:11
AT4G32640.2:11

General Information
CircRNA Name	AT4G32640_circ_g.12
ID in PlantcircBase	ath_circ_034133
Alias	4:15745043-15747925
Organism	Arabidpsis thaliana
Position	chr4: 15745043-15747925 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	find_circ; CIRI2
Parent gene	AT4G32640
Parent gene annotation	Protein transport protein Sec24-like At4g32640
Parent gene strand	+
Alternative splicing	AT4G32470_circ_g.1 AT4G32470_circ_g.2 AT4G32470_circ_g.3 4_circ_ag.4 4_circ_ag.5 4_circ_ag.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 AT4G32480_circ_g.1 AT4G32510_circ_g.1 AT4G32520_circ_g.1 AT4G32520_circ_g.2 AT4G32530_circ_g.1 AT4G32551_circ_g.1 AT4G32551_circ_g.2 AT4G32551_circ_g.3 AT4G32551_circ_g.4 AT4G32551_circ_g.5 AT4G32551_circ_g.6 AT4G32551_circ_g.7 AT4G32551_circ_g.8 AT4G32551_circ_g.9 AT4G32551_circ_g.10 AT4G32551_circ_g.11 AT4G32551_circ_g.12 AT4G32551_circ_g.13 AT4G32551_circ_g.14 AT4G32551_circ_g.15 AT4G32551_circ_g.16 AT4G32560_circ_g.1 AT4G32570_circ_g.1 AT4G32570_circ_g.2 AT4G32570_circ_g.3 AT4G32590_circ_g.1 AT4G32590_circ_g.2 AT4G32590_circ_g.3 AT4G32610_circ_g.1 AT4G32610_circ_g.2 AT4G32620_circ_g.1 AT4G32620_circ_g.2 AT4G32630_circ_g.1 AT4G32640_circ_g.1 AT4G32640_circ_g.2 AT4G32640_circ_g.3 AT4G32640_circ_g.4 AT4G32640_circ_g.5 AT4G32640_circ_g.6 AT4G32640_circ_g.7 AT4G32640_circ_g.8 AT4G32640_circ_g.9 AT4G32640_circ_g.10 AT4G32640_circ_g.11 AT4G32640_circ_g.13 AT4G32640_circ_g.14 AT4G32640_circ_g.15 AT4G32640_circ_g.16 AT4G32640_circ_g.17 AT4G32640_circ_g.18 AT4G32640_circ_g.19 AT4G32640_circ_g.20 AT4G32640_circ_g.21 AT4G32640_circ_g.22 AT4G32650_circ_g.1
Support reads	3
Tissues	flower
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT4G32640.1:11 AT4G32640.2:11

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTCTGTAAACCATCGTTTCCATTTATTGTAGGGTATTCAAGTGCAAGAATACTCTGGGAATTTC
TGCAAACGCATTCCAACTGACATTGATCTACCAGCGgatacactgatgagactccccgtgacta
tcactgtaatctgggtccagatggtagacgtagggatgttgatgaaagacctgagctgtgtagg
ggaaccgt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GATACACTGATGAGACTCCCCGTGACTATCACTGTAATCTGGGTCCAGATGGTAGACGTAGGGA
TGTTGATGAAAGACCTGAGCTGTGTAGGGGAACCGTTGAGTTTGTTGCTACAAAAGAATACATG
GTTAGTTTGTGAGACTTTCTGCTTATAAATGTAAAATTCTTTTGTTTTGTTGCTACATAAGATG
CCAATTTATTTTATGTGGTCTGGAATCTACCATTGTATTTGACAAGTGTTCTGTCCTCTGATTT
TGTGTTTTCCCGAAAATTTTAACCTATTACTACTGTGGTCAACGGTTTCTCTATACATACTGTA
CTGTTGATCTATTGAACTACCACCTAGATTACCTTTCTAGCTAAGATATTAATATTAACGTCGT
TTTGGGAGAAGTTGATGATCAGACATGTCGGGAATGGATGGAAATTTAAGTCATTATCTTTTCT
GGTAGGTACGGGATCCAATGCCAGCAGTATATTTTTTCCTCATTGATGTCTCAATGAATGCGAT
ACAAACAGGTGCTACTGCCGCTGCTTGCAATGCAATCCAGCAAGTACTTTCAGACCTTCCTGTA
AGTTTTTTCGCCATTTCCAACTTTCCAAAACATTCAGTTATATCCACCCTGTTCTGAATATCTA
TTTGGTTTACACGTGTCTGAAGACTTTTTTACTATTTTGGTGGTATTTGAAATTAAGTAACAGT
CCCTGTCCAAACCTTTTGAGGTTTTTAGTGATAGTTTAAATTTGCTTGTTACATGCATCACCCC
TTTGCATACTAAGGTGTTCATATCTGAATAATTTAGAGAGTAGCTTCTGCTGCATATCTCTTAG
CGTGTGTACCTTGTCCTTATCTTTAGTGAGACTGTGAACTTTTGTTATGGTATGGTTATGTTAC
CAATGGCTTTATAATTCTTATTTTGTATCGCCATTAGACAATTAATTTTTTTTCTGTATTCGTT
TTCAGGAAGGTCCTAGGACATTTGTTGGGATTGCTACATTTGACTCAACAATCCACTTCTATAA
TTTGAAACGTGCACTGCAGCAGGTGATTTGTTTGCACTAGTTTTTTTTCTTCTTTTGTAATTGT
TGGATGGAAAAAATAAAAAACGAGATCTACAAGATGTTTGATGCTCATTGTGCAGCCATTGATG
CTCATTGTCCCTGATGTACAAGATGTCTATACACCTTTAGAAACAGATGTTGTAGTTCAGCTAT
CTGAGGTCAGTTCTGGGTCATTTGTTTTCTATTTGGGTACTTCCTGATTAGTTTTTCCCTTGTT
TGTCAATGTGTCGTATAAGCTGGCTACTATTATTAAGATTGGTTATCGTAATTTCTTTCTCATA
CTTTTTGTATTTATTTTATATTGATGGGAGTTCAGTGCCGTCAACACCTAGAGCTTTTGCTGGA
TAGTATCCCAACGATGTTTCAGGAAAGTAAAATTCCTGAATCTGCTTTTGGTGCAGCAGTTAAG
GTACGGAATTGCTAAAGATGCATACGCAATACAAGTAGAAGTTTGGCACATTTGATGGCCTTCT
TGATTTCATGAGTTCGTTGTTTAGTCAGCATTAGACCTTTGTCAACTTGTTTAATGGTTTCAAT
CATCATTGCATGGCGTAAAATGATAAATTTTATAATCCGGTTTGAAGCAATCAATGAAGTGTCA
TTTCAGGTTAATTTACCGATGTTGCCAAGCTCACATGTGTTTTGTGCTGAGATCATTTCTAATG
AATCCTATTTTAGTTTTTGGGAAAAATGCCGAGGATAATATCTACTAGTCTCAGCATGTTTGAC
TTTCGTGTCTAACAACTCCTTTTCTCTAGGCTGCTTTCTTGGCGATGAAGAGCAAAGGAGGGAA
GCTTATGGTATTTCAATCAAGTATGATGCTCACTATATTTGGGCATTTTATATATTAGGGTATA
TTGATGCATGTGCTTCCAAGTCACCTAGAATCTATCGATGCACATTGAAAATTATTGATTTATT
AGAAGCATACTGCTCAGTACCTCTATAACGTAACTGATATGATTACCATCTTTTCCATAGTTTT
GTGTTCTGTTGGTGTTGGAGCACTTTCTTCTAGAGAGGCCGAAGGGAGAGCTAATATGTCTGCT
GGTGAAAAGGTAAACATGCTTCTTTCTTTTTTTTCAAAAGAATATACTGGTTCATTGCAAAATA
TTAAATTGTCCTGCAATTCTTTTTATTTCAGGAGGCCCATAAATTACTACAACCAGCAGACAAA
ACTCTAAAGACCATGGCTATTGAATTTGCTGAATACCAGGTATACCAATAGAATTATGTTCGAA
TTTAACTGATAATCTTTCCATCTGCGTATCAGTAATCTACAATGTATCATTCTTTCTTCATTGC
AATAGTTCGTCCATGTCTAAGCCATCCATAAATGTCTCAGGTCTGTGTAGATATATTTATCACA
ACTCAGGCCTATGTTGACATGGCTTCAATTTCCGTTATTCCAAGAACTACTGGAGGACAGGTAA
TTTCCAATATTCCTTACCCTTTCTGATTATCGAAACCATGTTGAGCTTGATGTCTAGGTTTTGC
CGCACTTACGATTTCAATCTTTTAACTATTTTTTCCAGGTGTATTGTTATTACCCTTTCTCAGC
TCTCTCAGATCCTCCCAAGCTTTACAATGATCTTAAATGGAATATTACTAGGCCACAGGGTTTT
GAGGCTGTCATGCGAGTCAGATGCAGCCAGGTATGTTTTTGCGGTAGAGGGTTCTCTTCATGCA
TTATTCTGTTAACTCCAGCTTAAGGCTAATTTTCTGTAAACCATCGTTTCCATTTATTGTAGGG
TATTCAAGTGCAAGAATACTCTGGGAATTTCTGCAAACGCATTCCAACTGACATTGATCTACCA
GCG
						
					

			
		

Sequences
Splice junction sequence	TTCTGTAAACCATCGTTTCCATTTATTGTAGGGTATTCAAGTGCAAGAATACTCTGGGAATTTC TGCAAACGCATTCCAACTGACATTGATCTACCAGCGgatacactgatgagactccccgtgacta tcactgtaatctgggtccagatggtagacgtagggatgttgatgaaagacctgagctgtgtagg ggaaccgt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GATACACTGATGAGACTCCCCGTGACTATCACTGTAATCTGGGTCCAGATGGTAGACGTAGGGA TGTTGATGAAAGACCTGAGCTGTGTAGGGGAACCGTTGAGTTTGTTGCTACAAAAGAATACATG GTTAGTTTGTGAGACTTTCTGCTTATAAATGTAAAATTCTTTTGTTTTGTTGCTACATAAGATG CCAATTTATTTTATGTGGTCTGGAATCTACCATTGTATTTGACAAGTGTTCTGTCCTCTGATTT TGTGTTTTCCCGAAAATTTTAACCTATTACTACTGTGGTCAACGGTTTCTCTATACATACTGTA CTGTTGATCTATTGAACTACCACCTAGATTACCTTTCTAGCTAAGATATTAATATTAACGTCGT TTTGGGAGAAGTTGATGATCAGACATGTCGGGAATGGATGGAAATTTAAGTCATTATCTTTTCT GGTAGGTACGGGATCCAATGCCAGCAGTATATTTTTTCCTCATTGATGTCTCAATGAATGCGAT ACAAACAGGTGCTACTGCCGCTGCTTGCAATGCAATCCAGCAAGTACTTTCAGACCTTCCTGTA AGTTTTTTCGCCATTTCCAACTTTCCAAAACATTCAGTTATATCCACCCTGTTCTGAATATCTA TTTGGTTTACACGTGTCTGAAGACTTTTTTACTATTTTGGTGGTATTTGAAATTAAGTAACAGT CCCTGTCCAAACCTTTTGAGGTTTTTAGTGATAGTTTAAATTTGCTTGTTACATGCATCACCCC TTTGCATACTAAGGTGTTCATATCTGAATAATTTAGAGAGTAGCTTCTGCTGCATATCTCTTAG CGTGTGTACCTTGTCCTTATCTTTAGTGAGACTGTGAACTTTTGTTATGGTATGGTTATGTTAC CAATGGCTTTATAATTCTTATTTTGTATCGCCATTAGACAATTAATTTTTTTTCTGTATTCGTT TTCAGGAAGGTCCTAGGACATTTGTTGGGATTGCTACATTTGACTCAACAATCCACTTCTATAA TTTGAAACGTGCACTGCAGCAGGTGATTTGTTTGCACTAGTTTTTTTTCTTCTTTTGTAATTGT TGGATGGAAAAAATAAAAAACGAGATCTACAAGATGTTTGATGCTCATTGTGCAGCCATTGATG CTCATTGTCCCTGATGTACAAGATGTCTATACACCTTTAGAAACAGATGTTGTAGTTCAGCTAT CTGAGGTCAGTTCTGGGTCATTTGTTTTCTATTTGGGTACTTCCTGATTAGTTTTTCCCTTGTT TGTCAATGTGTCGTATAAGCTGGCTACTATTATTAAGATTGGTTATCGTAATTTCTTTCTCATA CTTTTTGTATTTATTTTATATTGATGGGAGTTCAGTGCCGTCAACACCTAGAGCTTTTGCTGGA TAGTATCCCAACGATGTTTCAGGAAAGTAAAATTCCTGAATCTGCTTTTGGTGCAGCAGTTAAG GTACGGAATTGCTAAAGATGCATACGCAATACAAGTAGAAGTTTGGCACATTTGATGGCCTTCT TGATTTCATGAGTTCGTTGTTTAGTCAGCATTAGACCTTTGTCAACTTGTTTAATGGTTTCAAT CATCATTGCATGGCGTAAAATGATAAATTTTATAATCCGGTTTGAAGCAATCAATGAAGTGTCA TTTCAGGTTAATTTACCGATGTTGCCAAGCTCACATGTGTTTTGTGCTGAGATCATTTCTAATG AATCCTATTTTAGTTTTTGGGAAAAATGCCGAGGATAATATCTACTAGTCTCAGCATGTTTGAC TTTCGTGTCTAACAACTCCTTTTCTCTAGGCTGCTTTCTTGGCGATGAAGAGCAAAGGAGGGAA GCTTATGGTATTTCAATCAAGTATGATGCTCACTATATTTGGGCATTTTATATATTAGGGTATA TTGATGCATGTGCTTCCAAGTCACCTAGAATCTATCGATGCACATTGAAAATTATTGATTTATT AGAAGCATACTGCTCAGTACCTCTATAACGTAACTGATATGATTACCATCTTTTCCATAGTTTT GTGTTCTGTTGGTGTTGGAGCACTTTCTTCTAGAGAGGCCGAAGGGAGAGCTAATATGTCTGCT GGTGAAAAGGTAAACATGCTTCTTTCTTTTTTTTCAAAAGAATATACTGGTTCATTGCAAAATA TTAAATTGTCCTGCAATTCTTTTTATTTCAGGAGGCCCATAAATTACTACAACCAGCAGACAAA ACTCTAAAGACCATGGCTATTGAATTTGCTGAATACCAGGTATACCAATAGAATTATGTTCGAA TTTAACTGATAATCTTTCCATCTGCGTATCAGTAATCTACAATGTATCATTCTTTCTTCATTGC AATAGTTCGTCCATGTCTAAGCCATCCATAAATGTCTCAGGTCTGTGTAGATATATTTATCACA ACTCAGGCCTATGTTGACATGGCTTCAATTTCCGTTATTCCAAGAACTACTGGAGGACAGGTAA TTTCCAATATTCCTTACCCTTTCTGATTATCGAAACCATGTTGAGCTTGATGTCTAGGTTTTGC CGCACTTACGATTTCAATCTTTTAACTATTTTTTCCAGGTGTATTGTTATTACCCTTTCTCAGC TCTCTCAGATCCTCCCAAGCTTTACAATGATCTTAAATGGAATATTACTAGGCCACAGGGTTTT GAGGCTGTCATGCGAGTCAGATGCAGCCAGGTATGTTTTTGCGGTAGAGGGTTCTCTTCATGCA TTATTCTGTTAACTCCAGCTTAAGGCTAATTTTCTGTAAACCATCGTTTCCATTTATTGTAGGG TATTCAAGTGCAAGAATACTCTGGGAATTTCTGCAAACGCATTCCAACTGACATTGATCTACCA GCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.129151188

Conservation Information
Conserved circRNAs	NA
PMCS	0.129151188

			
						 Functional Information
					
						Coding potential
						NA
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	NA
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Philips et al., 2020

circRNA

Detail information of AT4G32640_circ_g.12

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