Detail information of BGIOSGA014657_circ_g.2


General Information
CircRNA Name BGIOSGA014657_circ_g.2
ID in PlantcircBase osi_circ_014596
Alias Chr04:27237418_27238140(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 25394622-25395344  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   i-circRNA
Identification method find_circ
Parent gene BGIOSGA014657
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA014657_circ_g.1 BGIOSGA014657_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTACAACCCCAAGATAAAGATAGCAATCTGTCCTATCCAAAAATCTTATTTTTCTTTTGG
GTGTTGGGATACAAGGCAGAGCTCAGCAGGTTGCGAcagcatgagcatcgtacatctctgatga
cttgcggagcaactgaaagcaattgcctggctgtcctaaactagtatgcgtcatttcaatatga
tagctata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCATGAGCATCGTACATCTCTGATGACTTGCGGAGCAACTGAAAGCAATTGCCTGGCTGTCC
TAAACTAGTATGCGTCATTTCAATATGATAGCTATATTTCGTTCAAAAAGAAGAATATGACAGT
ATCATGATTTCTCTGTAACATGATTTCCGAACTAGTAATCGAGCGTACCAATCTCAGTTCAAAT
GTTCTAAATTGGATGAGTTAAGAATTTTAACAGTTTCATGTTCCAATTCAAATGCTTCTTGAAA
AGAGGTCTAAAGAAAATGGTAATATACCGACATGGTTGGAGAAATATGAAAGAACTTTCAGATA
AGCGAGCAAAAAGGACCCAAAGGACTAAAGGCTCTCCTCAAAGGCTGTTCTTTTATGTGCCTTT
GATTCTGTTTAAATTCATTTTCTTCTGACATAAACCTTTGTATACTTTCAAAGGCAATTCGAAA
TTCATCTGTAAAGAGGGGGAAGCTGGGATGGATAAAGAGAGAGCTAGGGGGAAAAGGCAAAAGG
TGGAGGACAGGAAGTGAAGAATTCAAGGAAATTGATACTATCCTTTTCAACTGCTAGTGCTAAT
AGATTGCAAGGTAAAATCCAGTGAAGCTATGCTTAGCACCAATTTTATCTTTTACAACCCCAAG
ATAAAGATAGCAATCTGTCCTATCCAAAAATCTTATTTTTCTTTTGGGTGTTGGGATACAAGGC
AGAGCTCAGCAGGTTGCGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021