Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G02670_circ_g.2 |
ID in PlantcircBase | ath_circ_000300 |
Alias | Chr1:576993|577906 |
Organism | Arabidpsis thaliana |
Position | chr1: 576993-577906 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer; CIRI |
Parent gene | AT1G02670 |
Parent gene annotation |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Parent gene strand | + |
Alternative splicing | AT1G02670_circ_g.1 AT1G02670_circ_g.3 AT1G02670_circ_g.4 |
Support reads | 2 |
Tissues | seedling |
Exon boundary | No-Yes |
Splicing signals | GT-CA |
Number of exons covered | AT1G02670.2:2 AT1G02670.3:2 AT1G02670.6:2 AT1G02670.5:2 AT1G02670.1:2 AT1G02670.4:2 AT1G02670.7:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.14402717 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to methyl jasmonate |
Other Information | |
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References | Zhang et al., 2020 |